View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_low_4 (Length: 447)
Name: NF20997_low_4
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 1 - 436
Target Start/End: Complemental strand, 35438457 - 35438024
Alignment:
| Q |
1 |
aaaaaagatactataaagatggatatgaaaaagaacatataatacaaaatagtataactaattgagtgtatacnnnnnnnnnnaatgtagtagcaatggt |
100 |
Q |
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| T |
35438457 |
aaaaaagatactataaaggtggatatgaaaaataacatgtactacaaagtagtataactaatttagtgtatactttttttt--aatgtagtagcaatggt |
35438360 |
T |
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| Q |
101 |
tgatgataatttcaatgaggtagttgtcttttggtgctatgtgatgaatgtagcagcacaaattaattggccttaaactgaaattccaaatttatgacca |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35438359 |
tgatgacaatttcaatgaggtagttgtcttttggtgctatgtgatgaatgtagcagcacaaattaattggccttaaactgaaattccaaatttatgacca |
35438260 |
T |
|
| Q |
201 |
atgaaatgatacaagggtcactgaattttggatggtgaggttatattaaaaaccagaccaaaatatcggtctaattggaaatcatgacttatgttcatac |
300 |
Q |
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| T |
35438259 |
atgaaatgatacaagggtcactgaattttggatggtgaggttatattaaaaaccagaccaaaatatcggtctaattggaaatcatgacttatgttcatac |
35438160 |
T |
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| Q |
301 |
cataaaatgaaaagagccaaggactagtatagaaaatggaaatacatcaaataaatatcttaacnnnnnnnngccttaacttcaccaaaaacttatgaaa |
400 |
Q |
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| T |
35438159 |
cataaaatgaaaagaaccaaggactagtatagaaaatggaaatacatcaaataaatatcttaacaaaaaaaagccttaacttcaccaaaaacttatgaaa |
35438060 |
T |
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| Q |
401 |
caatgttttaacaaatgttctgatttgttgttgatg |
436 |
Q |
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| T |
35438059 |
caatgttttaacaaatgttctgatttgttgttgatg |
35438024 |
T |
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