View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_low_6 (Length: 380)
Name: NF20997_low_6
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 18 - 370
Target Start/End: Original strand, 25713380 - 25713728
Alignment:
| Q |
18 |
cacctacgaggtttggtagacccttttgtccctaagcctcaatcgatcgctatggctccactacaccaaaataatcttacattacttgaaaatcaaagct |
117 |
Q |
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| T |
25713380 |
cacctacgaggtttggtagacccttttgtccctaagcctcaatcgatcgctatggttccactacaccgaaataatcttacattactcgaaaatcaaagct |
25713479 |
T |
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| Q |
118 |
aatttatggtttcactatgacatgttttacaatgacaatcgtgaaaactttgcgcaaaactttaaagcagacaatacctcataaatgcgacttgagttta |
217 |
Q |
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| T |
25713480 |
aatttatggtttcactaagacatgttttacaatgacaatcgtgaaaactttgcacaaaa-tttaaagcagacaatacctcataaatgcgacttgagttca |
25713578 |
T |
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| Q |
218 |
aaacaaagtttatagtttatcaattcggaatgagggtattcatatctaaatctgtacttcgtcattaagcaacacttaaagtgttcttcttatatttcac |
317 |
Q |
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|||||||||||||||||| ||||||| |||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||| |
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| T |
25713579 |
aaacaaagtttatagtttgtcaattcagaatgagggttttcatatctaaatctgttcttcgtcattaagcaacacttatagtg---ttcttatatttcac |
25713675 |
T |
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| Q |
318 |
ttatttccacctgctcctctttgtttgtccctctgcctcactatcaacctttg |
370 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25713676 |
ttatttccacctgctcctctttgtttgcccctctgcctcactatcaacctttg |
25713728 |
T |
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