View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_low_7 (Length: 370)
Name: NF20997_low_7
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 109 - 244
Target Start/End: Complemental strand, 1163495 - 1163360
Alignment:
| Q |
109 |
tatactagcgtaatatgcaatttggactttaaattaaacaatcttagtagtttggttttgtatcaatggttatcctgcattttatcctctaaaatggtat |
208 |
Q |
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| T |
1163495 |
tatactagcgtaatatgcaatttggactttaaattaaacaatcttagtagtttggttttgtatcaatggttatcctgcattttatcctctaaaatggtat |
1163396 |
T |
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| Q |
209 |
cctctttgaaagtcttctctaaaatgttgtcctttt |
244 |
Q |
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| T |
1163395 |
cctctttgaaagtcttctataaaatgttgtcctttt |
1163360 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 1163649 - 1163539
Alignment:
| Q |
1 |
ctgtgttgggaggtcaattttttcacttttatagt-aaagttaaattatgagcatgtgcctaag-tcagaatgccttatttccatctccttctaatgaca |
98 |
Q |
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| T |
1163649 |
ctgtgttgggaggtcaattttttcacttttatagtaaaagttaaattatgagcatgtgttgatgtttagact-cgt--tttccatctccttctaatgaca |
1163553 |
T |
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| Q |
99 |
atgtctttattata |
112 |
Q |
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| T |
1163552 |
atgtctttattata |
1163539 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 1161506 - 1161416
Alignment:
| Q |
241 |
ttttgatctttgtaaattttctattagtatttttagtcacagtnnnnnnnnntccatcaacatttttctaaatatttataggaaccatttac |
332 |
Q |
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| T |
1161506 |
ttttaatctttgtaaattttctattagcatttttagtcaccgtaaaaaaag-tccatcaacattttgctagatatttataggaaccatttac |
1161416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 44
Target Start/End: Complemental strand, 1159659 - 1159621
Alignment:
| Q |
6 |
ttgggaggtcaattttttcacttttatagtaaagttaaa |
44 |
Q |
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| T |
1159659 |
ttgggaggtcaattttctcacttttatagtaaagttaaa |
1159621 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Complemental strand, 1182398 - 1182350
Alignment:
| Q |
51 |
gcatgtgcctaagtcagaatgccttatttccatctccttctaatgacaa |
99 |
Q |
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| T |
1182398 |
gcatgtgcctaggtcagaatctcttatatctatctccttctaatgacaa |
1182350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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