View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20997_low_8 (Length: 364)
Name: NF20997_low_8
Description: NF20997
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20997_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 49547061 - 49546696
Alignment:
| Q |
1 |
cgaaatcctctttagtacaatatttttagttcccccattttgagggaattttctgttgcaatgaaaaacaagccccctattcaaagccattccctttcct |
100 |
Q |
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| T |
49547061 |
cgaaaccctctttagtacaatatttttagttcccccattttaaggggattttctgttgcaatgaaaaacaagccccctattcaaagccattccctttcct |
49546962 |
T |
|
| Q |
101 |
ccttttttacccaaagtcattcactcccctccaaaatcacaaacaatgcct--aagaataaatcatcataa-gnnnnnnncaagagactcccacattgta |
197 |
Q |
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| T |
49546961 |
ccttttttacccaaagccattcactcccctccaaaatcacaaacaatgcctaaaagaataaatcatcataacaaaaaaaaaaagagactcccacattgta |
49546862 |
T |
|
| Q |
198 |
atcattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaattcagttcatatannnnnnnnggctcattatccattaaacctaa |
297 |
Q |
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|||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||| |
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| T |
49546861 |
atcattatgtcatgattcctcatttgtctttttcttttaacagatcctcctcctaattcagctcatattttttttttggctcattatccattaaacctaa |
49546762 |
T |
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| Q |
298 |
ggaagaaatactatggaatgatggactggccaaccccatttatagcactttattccaatacatttt |
363 |
Q |
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| T |
49546761 |
agaagaaatactatggaatgatggactggccaaccccatttatagcactttattccaatatatttt |
49546696 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 200 - 263
Target Start/End: Complemental strand, 49443948 - 49443886
Alignment:
| Q |
200 |
cattatgtcaggattcctcatttgtccttttcttttaacagatcctcctcctaattcagttcat |
263 |
Q |
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|||||||| |||||||||||||| || ||||||| |||||||||||||||| |||||| |||| |
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| T |
49443948 |
cattatgttaggattcctcattt-tctttttcttccaacagatcctcctcctcattcagctcat |
49443886 |
T |
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