View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20998_high_3 (Length: 506)
Name: NF20998_high_3
Description: NF20998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20998_high_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 20 - 494
Target Start/End: Complemental strand, 9862250 - 9861776
Alignment:
| Q |
20 |
ggggatacttattcaaacacttggttttctgtatatctttccatattcacttagtgcatctttgacaacaagaatcggtcattcgttagggtcaggacag |
119 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9862250 |
ggggatacttattcaaacacttggttttctgtatatctttccatattcacttagtgcatctttgacaacaagaatcggtcattcgttagggtcaggacag |
9862151 |
T |
|
| Q |
120 |
gcctctcgagcacaaggaacagctataattggaattttggtcgcatttgtacttggagtttcggcttttattggatcgattttagtgaggaaaaattggg |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9862150 |
gcctctcgagcacaaggaacagctataattggaattttggtcgcatttttacttggagtttcggcttttattggatcgattttagtgaggaaaaattggg |
9862051 |
T |
|
| Q |
220 |
ggaaattatttaccaacgaggtacaaattattgatatgataagaaaagtacttccgattttagggttatgtgaaattagcaattgggcacaaacggtatc |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9862050 |
ggaaattatttaccaacgaggtacaaattattgatatgataagaaaagtacttccgattttagggttatgtgaaattagcaattgggcacaaacggtatc |
9861951 |
T |
|
| Q |
320 |
gtgtgggattttagctggcaccgcacgtccttatgttggtgctaggatcaatttgtgtgcattttatttaattgggttaccggtttcaattttcgcttca |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9861950 |
gtgtgggattttagctggcaccgcacgtccttatgttggtgctaggattaatttgtgtgcattttatttaattgggttaccggtttcaattttcgcttca |
9861851 |
T |
|
| Q |
420 |
tttgtgtacaaatttgaattggttggtttgtggtgtggaatgttggcagcacaagtttcttgtttttgtatgatg |
494 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9861850 |
tttgtgtacaaatttgaattggttggtttgtggtgtggaatgttggcagcacaagtttcttgtttttgtatgatg |
9861776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 257 - 333
Target Start/End: Complemental strand, 1681513 - 1681437
Alignment:
| Q |
257 |
gataagaaaagtacttccgattttagggttatgtgaaattagcaattgggcacaaacggtatcgtgtgggattttag |
333 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||| |
|
|
| T |
1681513 |
gataagaaatatacttccaattttagggttatgtgaaattagcaatcgggcacaaacagtattatgtgggattttag |
1681437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University