View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20998_high_6 (Length: 249)
Name: NF20998_high_6
Description: NF20998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20998_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 28 - 241
Target Start/End: Complemental strand, 14948289 - 14948063
Alignment:
| Q |
28 |
agattgattttgtatatttgagagtttgatgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
127 |
Q |
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| T |
14948289 |
agattgattttgtatatttgagagtttgatatttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaaca |
14948190 |
T |
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| Q |
128 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgtt-------------gtaactctcaagtatactttgttctctttcaagatacaa |
214 |
Q |
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| T |
14948189 |
atgaacaatttcaaatctcaatcttttcaaatattatggaaaatcgttgcctaaggatgaggtaactctcaagtatactttgttctctttcaagatacaa |
14948090 |
T |
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| Q |
215 |
agatgtaccttaccaacatagtattat |
241 |
Q |
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| T |
14948089 |
agatgtaccttaccaacatagtattat |
14948063 |
T |
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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 31046270 - 31046212
Alignment:
| Q |
63 |
atttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatc |
121 |
Q |
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| T |
31046270 |
atttggttttgaaaatatgcaatttataaaataatgtcttgaaatcattggagttcatc |
31046212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 128
Target Start/End: Original strand, 29544478 - 29544550
Alignment:
| Q |
56 |
atgtttaatttggttctgaaagtatgcaatttataaaagattgtcttggaataattggagttcatcgcaacaa |
128 |
Q |
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| T |
29544478 |
atgtttgattttgttttgaaaatatgcaatttataaaatattgacttagaatcatcagagttcatcacaacaa |
29544550 |
T |
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