View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20998_low_2 (Length: 560)
Name: NF20998_low_2
Description: NF20998
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20998_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 194; Significance: 1e-105; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 234 - 475
Target Start/End: Complemental strand, 3152033 - 3151792
Alignment:
| Q |
234 |
ttcttgataatcatgtcagaacttcctgttccattcaagtgggactcacctgtctgaaccattgttaacatttgaaatactgaaggaatccaatgacgtt |
333 |
Q |
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| T |
3152033 |
ttcttgataaccatgtcagaacttcatgttccattcaagtgggactcacctgtgcgaaccattgttaacgtttgaaatactaaaggaatccaatgacgtt |
3151934 |
T |
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| Q |
334 |
ttctgaggctcggaatcatcacgaatctgagtccccatataattaacgggaagaagaaagattgtcccaacaattccagcaaaggcaaatacttttaaac |
433 |
Q |
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| T |
3151933 |
ttctgagactcggaatcatcacaaatctgagtccccatgtaattaactggaagaagaaagattgtcccaacaattccagcaaaggcaaatacttttaaac |
3151834 |
T |
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| Q |
434 |
tgcacaataccataatagaagggaaagtatcagatacacaca |
475 |
Q |
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| T |
3151833 |
tgcacaataccataatagaaaggaaagtatcagatatacaca |
3151792 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 12 - 102
Target Start/End: Complemental strand, 3152220 - 3152130
Alignment:
| Q |
12 |
atgaatccataaccttgataaaggccaaatctagcgatcagagttcccatgttataacttagataaaaattaagtaaatcaaatcaaattt |
102 |
Q |
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| T |
3152220 |
atgaatccataaccttgataaaggccaaatctagcgatcagaggtcccatgttataacttagataaaaattaactaaaacaattgaaattt |
3152130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 4005773 - 4005715
Alignment:
| Q |
16 |
atccataaccttgataaaggccaaatctagcgatcagagttcccatgttataacttaga |
74 |
Q |
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| T |
4005773 |
atccataaccttgataaaggccaaatctaggtatcagaattttcatgttataacttaga |
4005715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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