View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20999_high_3 (Length: 288)

Name: NF20999_high_3
Description: NF20999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20999_high_3
NF20999_high_3
[»] chr1 (1 HSPs)
chr1 (1-288)||(47480628-47480915)


Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 288
Target Start/End: Original strand, 47480628 - 47480915
Alignment:
Q  1 catcattgccccaaatgttggaccctacaaaccgacaaaatcgttagcacatctcaatcaaatgttccttatcatctccaaatagcatcaaaaccaacca 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47480628 catcattgccccaaatgttggaccctacaaaccaacaaaatcgttagcacatctcaatcaaatgttccttatcatctccaaatagcatcaaaaccaacca 47480727  T
Q  101 atatgcagttgnnnnnnntatctaannnnnnnnnnnnaatatcgatttccagattactttaaatcactttctaaatcataattgcacaaacaagcctata 200  Q
    |||||||||||       |||||||            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  47480728 atatgcagttgaaaaaaatatctaacccccaccccccaatatcgatttccagattactttaaatcactttctaaatcataattgcacaaacaaggctata 47480827  T
Q  201 aacaaaaaatgtacacctcataagacctctttagataaacagtttaattaactgccaatcgcataaacaattattatatacgcaagtg 288  Q
    ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  47480828 aaccaaaaatgtacacctcataagacctctttagataaacagtttaattaactgccgatcgcataaacaattattatatacgcaagtg 47480915  T

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