View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20999_low_2 (Length: 338)
Name: NF20999_low_2
Description: NF20999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20999_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 179; Significance: 1e-96; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 114 - 320
Target Start/End: Complemental strand, 15563214 - 15563008
Alignment:
| Q |
114 |
tttttgatcattttgatgaagggatacaaatgaccataggtaattcagatgtagctctggatgatgttgttgatggtggggttgtacaagaagaatacat |
213 |
Q |
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| T |
15563214 |
ttttggatcattttgatgaagggatacaaatgaccgtaggtaattcggatgtagctctggatgatgttgttgatggtggggttgtacaagaagaatacat |
15563115 |
T |
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| Q |
214 |
tgttgttgattctcaatctcctctctctacaagttttggtgaagattttgtccccagtgaatatgttggtcatcagacacaaaatcatgaagattttaaa |
313 |
Q |
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| T |
15563114 |
tgttattgattctcaatctcctctctctgcaagttttggtgaagattttgtcccctgtgaatgtgttggtcatcagacacaaaatcatgaagattttaaa |
15563015 |
T |
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| Q |
314 |
tattgct |
320 |
Q |
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||||||| |
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| T |
15563014 |
tattgct |
15563008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 161; Significance: 8e-86; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 161; E-Value: 8e-86
Query Start/End: Original strand, 71 - 318
Target Start/End: Complemental strand, 46266547 - 46266302
Alignment:
| Q |
71 |
aggtaaaaaatgcagtgtcagcaaagattaacaagttattggttttttgatcattttgatgaagggatacaaatgaccataggtaattcagatgtagctc |
170 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |||| | ||||||| | |
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| T |
46266547 |
aggtaaaaaatgcagtgtcagcaaagattaacaagttattggtttttggatcattttgatgaagggatacgaatgaccatagataatccggatgtagttt |
46266448 |
T |
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| Q |
171 |
tggatgatgttgttgatggtggggttgtacaagaagaatacattgttgttgattctcaatctcctctctctacaagttttggtgaagattttgtccccag |
270 |
Q |
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| T |
46266447 |
tggatgatgttgttgatggtggggttgtacaagaagaatacattgttattgattttcaatctcctccctgtacaagttttggtgaagattgtgtgccatg |
46266348 |
T |
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| Q |
271 |
tgaatatgttggtcatcagacacaaaatcatgaagattttaaatattg |
318 |
Q |
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| T |
46266347 |
tgaatgtgttggtcatcagatac--aatcataaagatcttaaatattg |
46266302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 114 - 214
Target Start/End: Complemental strand, 3507699 - 3507599
Alignment:
| Q |
114 |
tttttgatcattttgatgaagggatacaaatgaccataggtaattcagatgtagctctggatgatgttgttgatggtggggttgtacaagaagaatacat |
213 |
Q |
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|||| ||||| ||| ||||||||||| || |||||| | ||| |||| ||||||| ||||||| | ||||||| || |||||||||| || ||| |||| |
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| T |
3507699 |
ttttggatcagtttcatgaagggataggaaagaccattgataactcagttgtagctgtggatgacgctgttgattgttgggttgtacaggatgaagacat |
3507600 |
T |
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| Q |
214 |
t |
214 |
Q |
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| T |
3507599 |
t |
3507599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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