View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20999_low_5 (Length: 253)
Name: NF20999_low_5
Description: NF20999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20999_low_5 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 14 - 253
Target Start/End: Complemental strand, 45500 - 45261
Alignment:
| Q |
14 |
caaagggaggtttcaaattggcaagctatttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtg |
113 |
Q |
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| T |
45500 |
caaagggaggtttcaaattggcaggctatttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtg |
45401 |
T |
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| Q |
114 |
agactgaattaaactcctcaacaaagtgttggcgttatacatttagagtcgccagtatggtcaagaccaacctacttgacccagcctatatgggttaagg |
213 |
Q |
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| T |
45400 |
agactgaattaaactcctcaacaaagtgttggctttatacatttagagtcgccagtatggtcaagaccaacctacttgacccagcccatatgggttaagg |
45301 |
T |
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| Q |
214 |
ccaaaagttaaatctaaaatccaataaaagttgcaaacca |
253 |
Q |
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| T |
45300 |
ccagaagttaaatctaaaatccaataaaagttgaaaacca |
45261 |
T |
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Target: chr1 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 24 - 232
Target Start/End: Complemental strand, 21358933 - 21358726
Alignment:
| Q |
24 |
tttcaaattggcaagctatttctcagaaattcaaatcaaacatcaaaatggaattcaataagcatttaggctttagaagctgcaatagtgagactgaatt |
123 |
Q |
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| T |
21358933 |
tttcaaattggctggctgtttctcaaaaattcaaatcaaacataaaaatggattttgatagacatttaggctttgtaaactgcaactgtgatactcaatg |
21358834 |
T |
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| Q |
124 |
aaactcctcaacaaagtgttggcgttatacatttagagtcgccagtatggtcaagaccaacctacttgacccagcctatatgggttaaggccaaaagtta |
223 |
Q |
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| T |
21358833 |
aaactccttaacaaagtgttggctttaaacatttagagccatcaatatgatgaagtccaa-ctacttgccccaacccatatgggttaggccaaaaattta |
21358735 |
T |
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| Q |
224 |
aatctaaaa |
232 |
Q |
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| T |
21358734 |
aatctaaaa |
21358726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 98
Target Start/End: Original strand, 18382950 - 18383024
Alignment:
| Q |
25 |
ttcaaattggcaagctatttctcagaaattcaaatcaaacat-caaaatggaattcaataagcatttaggcttta |
98 |
Q |
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| T |
18382950 |
ttcaaattggtaggctcttgctcagaaattcataccaaaccttcaaaatgaaattcaataaacatttaggcttta |
18383024 |
T |
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