View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20999_low_6 (Length: 235)
Name: NF20999_low_6
Description: NF20999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20999_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 77772 - 77973
Alignment:
| Q |
18 |
tttggtagatattggtggtggcgaagtagtgaaggatgaagttgctcgtgaactagggtttgagaaagtatcagaagaattcattccagaatgcaaatca |
117 |
Q |
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| T |
77772 |
tttggtagatattggtggtggcgaagtagtgaaggatgaagttgcgcgtgaactagggtttgagaaagtatcagaagaattcattccagaatgcaaatca |
77871 |
T |
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| Q |
118 |
aaagcagtacttttcaaacacgtcaagacgggtgcacaagtcatctctgtttcaaacaaagatgagaacaaagtctttggcattgttttccgaactcctc |
217 |
Q |
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| T |
77872 |
atagcagtacttttcaaacacgtcaagacgggtgcacaagtcatctctgtttcaaacaaagatgagaacaaagtctttggcattgttttccgaactcctc |
77971 |
T |
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| Q |
218 |
cc |
219 |
Q |
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|| |
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| T |
77972 |
cc |
77973 |
T |
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