View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20999_low_8 (Length: 214)
Name: NF20999_low_8
Description: NF20999
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20999_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 21 - 198
Target Start/End: Original strand, 47481238 - 47481415
Alignment:
| Q |
21 |
ttaagcttgtggcaaaataattgaaataaaaaagcttaccattcttggggcaccatcaatttcagcaacttccataccagtaataatcataccaggaaca |
120 |
Q |
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| T |
47481238 |
ttaagcttgtggctaaataattgaaataaaaaagcttaccattcttggggcaccatcaatttcagcaacttccataccagtaacaatcataccaggaaca |
47481337 |
T |
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| Q |
121 |
acttcccttgtaagacgaacaatagcatcttcagcagtattcatatcaagtgctttcattccaggaacatgatcaatc |
198 |
Q |
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| T |
47481338 |
acttcccttgtaagacgaacaatagcatcttcagcagtattcatatcaagtgctttcattccaggaacatgatcaatc |
47481415 |
T |
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Target: chr4 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 56 - 185
Target Start/End: Original strand, 31407171 - 31407300
Alignment:
| Q |
56 |
ttaccattcttggggcaccatcaatttcagcaacttccataccagtaataatcataccaggaacaacttcccttgtaagacgaacaatagcatcttcagc |
155 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||| ||||| | ||||| ||||||||||| ||||| || || | |||||||||||| || || |
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| T |
31407171 |
ttaccattcttggagcaccatcaatctcagcaacctccatgccagttactatcattccaggaacaacctccctagtgagcctaacaatagcatcctcggc |
31407270 |
T |
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| Q |
156 |
agtattcatatcaagtgctttcattccagg |
185 |
Q |
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| T |
31407271 |
agtgttcatgtcgagggccttcattccagg |
31407300 |
T |
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