View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2099_high_3 (Length: 250)

Name: NF2099_high_3
Description: NF2099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2099_high_3
NF2099_high_3
[»] chr1 (20 HSPs)
chr1 (1-221)||(13984189-13984409)
chr1 (45-190)||(36563836-36563979)
chr1 (49-175)||(894777-894903)
chr1 (49-157)||(10040419-10040525)
chr1 (45-190)||(51049803-51049948)
chr1 (55-176)||(34038797-34038915)
chr1 (49-175)||(42410189-42410315)
chr1 (56-173)||(38067712-38067829)
chr1 (57-160)||(37296983-37297086)
chr1 (45-175)||(5892655-5892785)
chr1 (49-175)||(3831375-3831500)
chr1 (4-75)||(38902118-38902189)
chr1 (50-164)||(1795817-1795931)
chr1 (122-175)||(35365592-35365645)
chr1 (62-175)||(14104303-14104416)
chr1 (123-175)||(32213511-32213563)
chr1 (57-156)||(36384861-36384960)
chr1 (1-52)||(43822927-43822978)
chr1 (49-98)||(13208078-13208127)
chr1 (1-54)||(23625253-23625306)
[»] chr4 (25 HSPs)
chr4 (51-171)||(16958357-16958477)
chr4 (51-199)||(31861547-31861693)
chr4 (50-175)||(25231500-25231625)
chr4 (50-175)||(35808688-35808813)
chr4 (50-206)||(41735394-41735549)
chr4 (50-175)||(3121056-3121180)
chr4 (50-175)||(41621910-41622035)
chr4 (45-205)||(9093570-9093729)
chr4 (50-182)||(37624818-37624950)
chr4 (47-207)||(43594946-43595104)
chr4 (49-209)||(52270429-52270588)
chr4 (45-175)||(26876068-26876198)
chr4 (49-174)||(8680497-8680621)
chr4 (45-152)||(38460134-38460241)
chr4 (48-207)||(46737399-46737558)
chr4 (57-176)||(24504672-24504791)
chr4 (129-190)||(10097993-10098054)
chr4 (50-176)||(43142051-43142174)
chr4 (133-175)||(6917309-6917351)
chr4 (31-65)||(25231617-25231651)
chr4 (4-42)||(39055316-39055354)
chr4 (1-47)||(52199954-52200000)
chr4 (121-182)||(4512794-4512855)
chr4 (7-52)||(10180535-10180580)
chr4 (1-53)||(26699158-26699210)
[»] chr7 (22 HSPs)
chr7 (51-214)||(28514598-28514760)
chr7 (49-175)||(31191371-31191496)
chr7 (50-175)||(48488413-48488538)
chr7 (49-175)||(23247722-23247847)
chr7 (45-205)||(10624915-10625074)
chr7 (57-178)||(28646616-28646737)
chr7 (57-176)||(19086302-19086421)
chr7 (48-174)||(40198950-40199077)
chr7 (49-190)||(45618441-45618581)
chr7 (56-157)||(37869719-37869820)
chr7 (106-173)||(8584124-8584191)
chr7 (49-191)||(5081755-5081897)
chr7 (56-190)||(25119942-25120076)
chr7 (50-176)||(45662229-45662353)
chr7 (57-157)||(43803319-43803426)
chr7 (56-176)||(34503126-34503243)
chr7 (2-50)||(32724387-32724435)
chr7 (9-52)||(36481928-36481971)
chr7 (44-98)||(8584028-8584081)
chr7 (122-175)||(34823562-34823615)
chr7 (54-190)||(24316242-24316378)
chr7 (4-44)||(36657818-36657858)
[»] chr3 (17 HSPs)
chr3 (50-206)||(23919110-23919265)
chr3 (55-206)||(8108180-8108329)
chr3 (50-205)||(45249354-45249508)
chr3 (56-175)||(53466229-53466348)
chr3 (51-175)||(48993361-48993484)
chr3 (50-175)||(6488787-6488912)
chr3 (67-190)||(30403233-30403356)
chr3 (122-190)||(47595563-47595631)
chr3 (55-98)||(53751654-53751697)
chr3 (128-206)||(31580366-31580443)
chr3 (49-191)||(39611611-39611752)
chr3 (121-178)||(26043451-26043508)
chr3 (8-53)||(41211811-41211856)
chr3 (1-49)||(29950707-29950754)
chr3 (1-49)||(29999861-29999908)
chr3 (60-104)||(33865309-33865353)
chr3 (130-190)||(42225965-42226025)
[»] chr2 (15 HSPs)
chr2 (49-175)||(36903960-36904086)
chr2 (50-206)||(223885-224040)
chr2 (45-175)||(38402535-38402665)
chr2 (57-174)||(4428778-4428895)
chr2 (57-204)||(39791502-39791648)
chr2 (49-157)||(9047593-9047701)
chr2 (45-175)||(15335832-15335962)
chr2 (48-175)||(19955076-19955203)
chr2 (60-176)||(41283335-41283450)
chr2 (106-199)||(6563054-6563146)
chr2 (4-50)||(14772849-14772895)
chr2 (4-50)||(11922098-11922144)
chr2 (54-176)||(14812273-14812395)
chr2 (133-190)||(39491075-39491132)
chr2 (8-52)||(9583300-9583344)
[»] chr8 (20 HSPs)
chr8 (50-175)||(38573289-38573414)
chr8 (56-159)||(7642613-7642716)
chr8 (49-206)||(13018456-13018612)
chr8 (52-139)||(44395682-44395769)
chr8 (54-175)||(36642698-36642819)
chr8 (49-160)||(12978258-12978369)
chr8 (44-199)||(12763252-12763402)
chr8 (50-199)||(11611487-11611637)
chr8 (49-175)||(23518197-23518323)
chr8 (50-93)||(33015582-33015625)
chr8 (128-214)||(16345969-16346054)
chr8 (106-204)||(24999439-24999536)
chr8 (4-53)||(13628957-13629006)
chr8 (4-53)||(13729369-13729418)
chr8 (57-109)||(13079294-13079346)
chr8 (7-50)||(23982406-23982449)
chr8 (2-55)||(1155055-1155108)
chr8 (122-207)||(10328636-10328720)
chr8 (4-56)||(4326067-4326119)
chr8 (9-53)||(37673677-37673721)
[»] chr5 (16 HSPs)
chr5 (35-180)||(606661-606806)
chr5 (49-204)||(34338875-34339029)
chr5 (45-199)||(15476862-15477015)
chr5 (54-175)||(1088209-1088330)
chr5 (45-206)||(8713747-8713906)
chr5 (55-175)||(25713350-25713469)
chr5 (55-134)||(10284980-10285059)
chr5 (56-207)||(26362248-26362398)
chr5 (75-190)||(32292237-32292352)
chr5 (5-65)||(41520770-41520830)
chr5 (67-204)||(16054383-16054518)
chr5 (106-175)||(14662978-14663047)
chr5 (45-161)||(31006345-31006458)
chr5 (56-182)||(29045332-29045458)
chr5 (133-205)||(10285333-10285403)
chr5 (121-213)||(37447299-37447390)
[»] chr6 (4 HSPs)
chr6 (49-215)||(6100657-6100822)
chr6 (49-208)||(32147862-32148020)
chr6 (57-205)||(33134189-33134337)
chr6 (4-55)||(32658344-32658395)
[»] scaffold0002 (1 HSPs)
scaffold0002 (45-175)||(433865-433993)
[»] scaffold0020 (1 HSPs)
scaffold0020 (56-147)||(171589-171680)


Alignment Details
Target: chr1 (Bit Score: 173; Significance: 4e-93; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 13984189 - 13984409
Alignment:
Q  1 tgggacccatttaagaacttaaaaataggtgtctccattgtggatgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcg 100  Q
    |||||||||||||||||||||||||| | ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||    
T  13984189 tgggacccatttaagaacttaaaaatggatgtctccattgtggatgctctaacggtattgtttaaacatctaaaagtagcaacttttacattggaaatcg 13984288  T
Q  101 tacgattataacttcaataagtgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaa 200  Q
    |||| ||||||||||||||| ||||| ||||||||||| ||  ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  13984289 tacggttataacttcaataaatgtttgacttatatttttaaagcataatttctttttacggattacttaaacaatatctttatgacactttgttaacaaa 13984388  T
Q  201 accctttaattaattgctaaa 221  Q
    |||||||||||||||||||||    
T  13984389 accctttaattaattgctaaa 13984409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 36563979 - 36563836
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    ||||| ||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||  |||||||| || |||||||| ||||||||||||||| |    
T  36563979 tgctccaagggcattgtttaagcatttaaaagtagcaacttttacattgaaaattgtacggatataactttaacaagtgtttgacttatattttcaaggc 36563880  T
Q  145 ataatttctttttatggattacttaaacaatatctttaggacactt 190  Q
    ||||||||||||  ||  || |||||||||| || |||||||||||    
T  36563879 ataatttctttt--tgagttccttaaacaatgtccttaggacactt 36563836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 894903 - 894777
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||| |||||||||||| |||||||||||||||||||||   ||| |||| |||||||||| |||| || |||||||| |||| || |||||||||||||    
T  894903 ctaacggcattgtttaagcatctaaaagtagcaacttttgtgttgaaaattgtacgattatgactttaacaagtgtttgacttgtactttcaagacataa 894804  T
Q  149 tttctttttatggattacttaaacaat 175  Q
    |||| |||| ||| || ||||||||||    
T  894803 tttccttttgtgggttccttaaacaat 894777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 49 - 157
Target Start/End: Complemental strand, 10040525 - 10040419
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||||||||||||||| ||||||||||||| ||||||| |||||||||| || || |||||||||||| || ||||  ||||||||||||||||| |||    
T  10040525 ctaagggcattgtttaagcatctaaaagtagtaacttttgcattggaaattgtccggttataacttcaacaaatgtt--acttatattttcaagacgtaa 10040428  T
Q  149 tttcttttt 157  Q
    ||| |||||    
T  10040427 ttttttttt 10040419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 45 - 190
Target Start/End: Complemental strand, 51049948 - 51049803
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    ||||||||||||||||||||| ||| ||||||||||||||||| ||  ||| ||  ||||||||| |||| || |||||||| |||| ||||||||||||    
T  51049948 tgctctaagggcattgtttaagcatataaaagtagcaacttttgcaccggagattatacgattatgactttaacaagtgtttaacttgtattttcaagac 51049849  T
Q  145 ataatttctttttatggattacttaaacaatatctttaggacactt 190  Q
    |||||||  |||| |  ||| ||||||||||| | |||| ||||||    
T  51049848 ataattttcttttctaaattccttaaacaatacccttagaacactt 51049803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 55 - 176
Target Start/End: Original strand, 34038797 - 34038915
Alignment:
Q  55 gcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctt 154  Q
    ||||||||||| ||||||||||||| ||||||| || ||||||| ||||| |||||| ||   ||| ||||| ||||||||||||||  |||||||||||    
T  34038797 gcattgtttaagcatctaaaagtagtaacttttgcaatggaaattgtacggttataagtt---taaatgtttgacttatattttcaatgcataatttctt 34038893  T
Q  155 tttatggattacttaaacaata 176  Q
    |||||| ||| |||||||||||    
T  34038894 tttatgaatttcttaaacaata 34038915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 42410189 - 42410315
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||| |||||||||||| ||||||||||||||||||||| ||||||||||  || | |  | || | || |||||||| |||| ||||||||||||||||    
T  42410189 ctaaaggcattgtttaatcatctaaaagtagcaacttttgcattggaaattatatggtattgaccttaacaagtgtttgacttgtattttcaagacataa 42410288  T
Q  149 tttctttttatggattacttaaacaat 175  Q
    ||||||||| ||| || ||||||||||    
T  42410289 tttctttttgtgggttccttaaacaat 42410315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 173
Target Start/End: Original strand, 38067712 - 38067829
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    |||||||||| ||||||||||||  |||||||  |||| |||| ||||||| || |||| || || ||||| |||| |||||||||| ||||||||||||    
T  38067712 cattgtttaagcatctaaaagtattaacttttgtattgaaaattgtacgatgatgactttaacaaatgtttgacttgtattttcaaggcataatttcttt 38067811  T
Q  156 ttatggattacttaaaca 173  Q
    || |||||| ||||||||    
T  38067812 ttgtggatttcttaaaca 38067829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 160
Target Start/End: Complemental strand, 37297086 - 37296983
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttt 156  Q
    |||| |||| ||||||||||||||||||||| ||||| |||| ||| ||||| || ||||| |||||||| | |||||||||||||  |||||||||| |    
T  37297086 attgcttaaccatctaaaagtagcaacttttgcattgaaaattgtaggattacaatttcaacaagtgtttgatttatattttcaaggtataatttcttgt 37296987  T
Q  157 tatg 160  Q
    ||||    
T  37296986 tatg 37296983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 5892655 - 5892785
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    |||||||||  |||||||||| ||| ||||| ||| |||||||  |||||||||  |||| |||| |||| ||||||||||| |||| |||||| ||||     
T  5892655 tgctctaagaacattgtttaagcatttaaaaatagtaacttttggattggaaattatacggttatgactttaataagtgtttgacttgtatttttaagat 5892754  T
Q  145 ataatttctttttatggattacttaaacaat 175  Q
    ||||||||||||| |  ||| ||||||||||    
T  5892755 ataatttctttttgtatattccttaaacaat 5892785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 3831375 - 3831500
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||||| |||||||||| ||||||||||||| || |||| |||||||||| ||||  |||| |||| || | |||||  | || ||||||||||||||||    
T  3831375 ctaaggccattgtttaagcatctaaaagtagaaatttttgcattggaaattgtacagttatgactttaacatgtgttgaatttgtattttcaagacataa 3831474  T
Q  149 tttctttttatggattacttaaacaat 175  Q
    ||| ||||||||| ||  |||||||||    
T  3831475 ttt-tttttatgggttctttaaacaat 3831500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 75
Target Start/End: Original strand, 38902118 - 38902189
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtggatgctctaagggcattgtttaaacatctaaaa 75  Q
    |||||||||||||||  ||||||  ||||||||||||||| |||||| ||| |||||||||| |||||||||    
T  38902118 gacccatttaagaacccaaaaatgagtgtctccattgtgggtgctcttaggacattgtttaagcatctaaaa 38902189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 164
Target Start/End: Original strand, 1795817 - 1795931
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||| |||||||||||  || ||||| || |||||||||| ||| |||| ||||| |||| |||| || | |||||| |||| |||||||||||| ||||    
T  1795817 taagagcattgtttaaggatttaaaaataacaacttttaccttgaaaattgtacggttatgactttaagatgtgtttgacttgtattttcaagacttaat 1795916  T
Q  150 ttctttttatggatt 164  Q
    |||||| | ||||||    
T  1795917 ttctttctgtggatt 1795931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 35365592 - 35365645
Alignment:
Q  122 tgtttcacttatattttcaagacataatttctttttatggattacttaaacaat 175  Q
    ||||| |||||||||||||||| |||||||||| ||||||||| ||||||||||    
T  35365592 tgtttgacttatattttcaagatataatttcttattatggatttcttaaacaat 35365645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 175
Target Start/End: Original strand, 14104303 - 14104416
Alignment:
Q  62 ttaaacatctaaaagtagcaacttttacattggaaatcgtacgat--tataacttcaataagtgtttcacttatattttcaagacataatttctttttat 159  Q
    |||| ||||||||||||||||||||| ||||| |||| | ||| |  ||||||||||| |||| ||| ||||| ||||||||| ||||| ||||||||||    
T  14104303 ttaagcatctaaaagtagcaacttttgcattgaaaattgcacggttatataacttcaacaagtatttgactta-attttcaaggcataa-ttctttttat 14104400  T
Q  160 ggattacttaaacaat 175  Q
     |||| ||| ||||||    
T  14104401 agattccttcaacaat 14104416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 32213563 - 32213511
Alignment:
Q  123 gtttcacttatattttcaagacataatttctttttatggattacttaaacaat 175  Q
    |||| ||||||||||| |||||||||||||||||||||| || ||||||||||    
T  32213563 gtttgacttatatttttaagacataatttctttttatgggtttcttaaacaat 32213511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 57 - 156
Target Start/End: Original strand, 36384861 - 36384960
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttt 156  Q
    ||||||||| ||| |||||||| ||||||||||| | |||||  ||||||||||| || || | |||||| | || ||||||||||| ||||||| ||||    
T  36384861 attgtttaagcatataaaagtaacaacttttacaatagaaattatacgattataaatttaacatgtgtttaaattgtattttcaagatataatttttttt 36384960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43822927 - 43822978
Alignment:
Q  1 tgggacccatttaagaacttaaaaataggtgtctccattgtggatgctctaa 52  Q
    ||||||||||||||||||  |||||| ||| |||||||||||||||||||||    
T  43822927 tgggacccatttaagaaccaaaaaatgggtatctccattgtggatgctctaa 43822978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 49 - 98
Target Start/End: Complemental strand, 13208127 - 13208078
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaat 98  Q
    |||||| |||||||||| |||||||||||| ||||||||  |||||||||    
T  13208127 ctaaggacattgtttaagcatctaaaagtaacaacttttgaattggaaat 13208078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23625253 - 23625306
Alignment:
Q  1 tgggacccatttaagaacttaaaaataggtgtctccattgtggatgctctaagg 54  Q
    |||||||||||||||| || ||| ||  | ||||||||||||||||||||||||    
T  23625253 tgggacccatttaagacctcaaagatgagagtctccattgtggatgctctaagg 23625306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 16958357 - 16958477
Alignment:
Q  51 aagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatt 150  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||||| |||||||||||||||||||||||    
T  16958357 aagggcattgtttaagcatctaaaagtagcaacttttacattggaaattgcacgtttataacttcaacaagtgtttgacttatattttcaagacataatt 16958456  T
Q  151 tctttttatggattacttaaa 171  Q
    |||||||||||||| ||||||    
T  16958457 tctttttatggattccttaaa 16958477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 51 - 199
Target Start/End: Original strand, 31861547 - 31861693
Alignment:
Q  51 aagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatt 150  Q
    ||||||||||||||| ||||||||| ||||||||||| |||||||||| || || |||||| || || |||||||| |||||||||||||||||||||||    
T  31861547 aagggcattgtttaagcatctaaaa-tagcaacttttgcattggaaattgtccggttataattttaacaagtgtttgacttatattttcaagacataatt 31861645  T
Q  151 tctttttatggattacttaaacaatatctttaggacactttgttaacaa 199  Q
    |||||||||||||| |||||||||||   ||||||||| ||||||||||    
T  31861646 tctttttatggattccttaaacaatactcttaggacac-ttgttaacaa 31861693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 25231500 - 25231625
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    ||||||||| ||| || ||||||||| ||||||||||| |||||||||| ||||| |||||||||||| || | ||| ||||||||||||||||||||||    
T  25231500 taagggcatggttcaagcatctaaaactagcaacttttgcattggaaattgtacggttataacttcaacaaatatttgacttatattttcaagacataat 25231599  T
Q  150 ttctttttatggattacttaaacaat 175  Q
    ||||||||||||||| ||||||||||    
T  25231600 ttctttttatggattccttaaacaat 25231625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 35808813 - 35808688
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    ||||| |||||||||| ||||||||||||||||||||| ||||| |||| ||||| ||||||||||||  ||||||| |||||||||||||||| |||||    
T  35808813 taaggacattgtttaagcatctaaaagtagcaacttttgcattgaaaattgtacggttataacttcaactagtgtttgacttatattttcaagatataat 35808714  T
Q  150 ttctttttatggattacttaaacaat 175  Q
    |||||||||||| || ||||||||||    
T  35808713 ttctttttatgggttccttaaacaat 35808688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 41735549 - 41735394
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||||||||||||| |||||||||||||||| ||||  ||||||||| |||||||||| |||| || |||||||| |||| |||||||||||||||||    
T  41735549 taagggcattgtttaagcatctaaaagtagcaatttttgtattggaaattgtacgattatgactttaacaagtgtttgacttgtattttcaagacataat 41735450  T
Q  150 ttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctt 206  Q
    |||||||| ||  || ||||||||||||  ||||| ||| |||||||||| ||||||    
T  41735449 ttctttttgtgagtttcttaaacaatattcttagggcac-ttgttaacaagaccctt 41735394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 3121180 - 3121056
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||||||||||||| |||||||||||||| |||||  ||||| |||| ||||| |||||||||||| || || || ||||||||||||||||||||||    
T  3121180 taagggcattgtttaagcatctaaaagtagcgactttg-cattgaaaattgtacggttataacttcaacaaatgattgacttatattttcaagacataat 3121082  T
Q  150 ttctttttatggattacttaaacaat 175  Q
    |||||||||||| || ||||||||||    
T  3121081 ttctttttatgggttccttaaacaat 3121056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 41622035 - 41621910
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||||||||||||| ||| ||||||||||||||||||||||| |||| |||||||||| |||| || ||||| || | || |||||||||||||||||    
T  41622035 taagggcattgtttaagcatataaaagtagcaacttttacattgaaaattgtacgattatgactttaacaagtgattgatttgtattttcaagacataat 41621936  T
Q  150 ttctttttatggattacttaaacaat 175  Q
    |||||||| ||| || ||||||||||    
T  41621935 ttctttttgtgggttccttaaacaat 41621910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 45 - 205
Target Start/End: Original strand, 9093570 - 9093729
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    |||| |||||| |||||||||   ||||||||||| || |||| ||||| |||| ||||| ||||||||| || |||||||| ||||||||||||||| |    
T  9093570 tgctttaagggtattgtttaagtctctaaaagtagtaatttttgcattgaaaattgtacggttataacttaaacaagtgtttgacttatattttcaaggc 9093669  T
Q  145 ataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccct 205  Q
    | ||||||||||||||| || |||||||||| || ||||||||| |||||||||| |||||    
T  9093670 aaaatttctttttatgggttccttaaacaatgtccttaggacac-ttgttaacaagaccct 9093729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 50 - 182
Target Start/End: Complemental strand, 37624950 - 37624818
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    ||||| |||||||||| ||||||||||||| ||||||| ||||| |||| ||||| ||||||||| || |||||||| ||||||||||||||  ||| ||    
T  37624950 taaggacattgtttaagcatctaaaagtagtaacttttgcattgaaaattgtacggttataactttaacaagtgtttgacttatattttcaaagcattat 37624851  T
Q  150 ttctttttatggattacttaaacaatatcttta 182  Q
    |||||||||||| || |||||||||| ||||||    
T  37624850 ttctttttatgggttccttaaacaatgtcttta 37624818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 47 - 207
Target Start/End: Complemental strand, 43595104 - 43594946
Alignment:
Q  47 ctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacat 146  Q
    |||||||  |||||||||| |||||||||||||||||||||  |||| |||| ||||| |||||||||||| ||| |||| ||||| |||||||||||||    
T  43595104 ctctaagaacattgtttaagcatctaaaagtagcaacttttgtattgaaaattgtacggttataacttcaagaagggtttaacttacattttcaagacat 43595005  T
Q  147 aatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaacccttt 207  Q
    ||||||||||||||| ||  |||||||||    ||||| || |||||||||||||||||||    
T  43595004 aatttctttttatgggtt-tttaaacaatgctcttagggca-tttgttaacaaaacccttt 43594946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 49 - 209
Target Start/End: Complemental strand, 52270588 - 52270429
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||||||||||||||| ||| ||||| ||||||||||| |||||||||| |||||| ||| |||  || |||||||| ||||||||||||||||||||     
T  52270588 ctaagggcattgtttaagcatataaaaatagcaacttttgcattggaaattgtacgagtatgactgtaacaagtgtttgacttatattttcaagacatat 52270489  T
Q  149 tttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctttaa 209  Q
    |||| |||| ||| || ||||||||||  | ||||| ||| |||||||||| |||||||||    
T  52270488 tttccttttgtgggttccttaaacaatgcccttagggcac-ttgttaacaagaccctttaa 52270429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 26876068 - 26876198
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    ||||||||||| ||||||||| ||| ||||||||||| |||||  ||||||||| ||| | |||| |||| || |||||||| |||| |||||||||| |    
T  26876068 tgctctaagggtattgtttaagcatataaaagtagcagcttttgtattggaaattgtagggttatgactttaagaagtgtttgacttgtattttcaagcc 26876167  T
Q  145 ataatttctttttatggattacttaaacaat 175  Q
    ||||||||||||| ||| || ||||||||||    
T  26876168 ataatttctttttttgggttccttaaacaat 26876198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 49 - 174
Target Start/End: Original strand, 8680497 - 8680621
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||| ||||| |||||||| | |||||||| |||||||| |||||||||| |||||||||| |||| || || ||||| |||||||||||||| |||||     
T  8680497 ctaaaggcatagtttaaacttataaaagtaccaacttttgcattggaaattgtacgattatgactttaacaaatgttttacttatattttcaaaacatat 8680596  T
Q  149 tttctttttatggattacttaaacaa 174  Q
    ||||  ||||||| || |||||||||    
T  8680597 tttc-ctttatgggttccttaaacaa 8680621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 45 - 152
Target Start/End: Original strand, 38460134 - 38460241
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    |||||||||||| ||||||||||||||||   || ||| |||| ||||| |||| |||||||  |||||| ||||||||||| ||||||||| |||| ||    
T  38460134 tgctctaagggcgttgtttaaacatctaattataacaaattttgcattgaaaattgtacgatattaactttaataagtgtttgacttatattctcaatac 38460233  T
Q  145 ataatttc 152  Q
    ||||||||    
T  38460234 ataatttc 38460241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 48 - 207
Target Start/End: Complemental strand, 46737558 - 46737399
Alignment:
Q  48 tctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttc-aataagtgtttcacttatattttcaagacat 146  Q
    |||||| ||||| ||||| ||| ||||| || |||||||| ||||| |||| |||||||| | ||||  || || ||||| |||||||||||||||||||    
T  46737558 tctaagagcattctttaagcatataaaaatatcaacttttgcattgaaaattgtacgattgtgacttttaacaaatgtttaacttatattttcaagacat 46737459  T
Q  147 aatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaacccttt 207  Q
     |||||||||| ||  || |||||||||| || ||| ||||| |||||| ||| |||||||    
T  46737458 gatttctttttgtgtgttccttaaacaatgtccttaagacac-ttgttagcaagacccttt 46737399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 24504791 - 24504672
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttt 156  Q
    ||||||||| ||||||||| || ||||||||  |||  |||| ||||| ||||||||| ||||||| ||| || |||||||| |||| ||||||  ||||    
T  24504791 attgtttaagcatctaaaaatatcaacttttgtattaaaaattgtacggttataactttaataagtatttgacatatattttaaagatataattattttt 24504692  T
Q  157 tatggattacttaaacaata 176  Q
    | |||||| |||||||||||    
T  24504691 tttggattccttaaacaata 24504672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 129 - 190
Target Start/End: Original strand, 10097993 - 10098054
Alignment:
Q  129 cttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactt 190  Q
    ||||||||||||||||| ||||||| ||| |||||| |||||||||||| ||||||||||||    
T  10097993 cttatattttcaagacaaaatttctctttgtggattccttaaacaatatttttaggacactt 10098054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 176
Target Start/End: Complemental strand, 43142174 - 43142051
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||| ||| ||||| ||| ||||||||  || |||| |||||||||| ||| | |||| |||| || ||   ||| ||||||||||||||||||||||    
T  43142174 taagggtattatttaagcatataaaagtaataatttttgcattggaaattgtaaggttatgactttaacaa---tttgacttatattttcaagacataat 43142078  T
Q  150 ttctttttatggattacttaaacaata 176  Q
    |||||||| ||| || |||||||||||    
T  43142077 ttctttttgtgggttccttaaacaata 43142051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 175
Target Start/End: Complemental strand, 6917351 - 6917309
Alignment:
Q  133 tattttcaagacataatttctttttatggattacttaaacaat 175  Q
    |||||||||||||  ||||||||||||||||| ||||||||||    
T  6917351 tattttcaagacagtatttctttttatggattccttaaacaat 6917309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 65
Target Start/End: Complemental strand, 25231651 - 25231617
Alignment:
Q  31 gtctccattgtggatgctctaagggcattgtttaa 65  Q
    |||||||||||||| ||||||||||||||||||||    
T  25231651 gtctccattgtggaggctctaagggcattgtttaa 25231617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 39055316 - 39055354
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtg 42  Q
    ||||||||||||||| ||||||| |||||||||||||||    
T  39055316 gacccatttaagaacctaaaaatgggtgtctccattgtg 39055354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 52199954 - 52200000
Alignment:
Q  1 tgggacccatttaagaacttaaaaataggtgtctccattgtggatgc 47  Q
    ||||||||||||||||||  |||||| ||||||||| ||||||||||    
T  52199954 tgggacccatttaagaacccaaaaatgggtgtctccgttgtggatgc 52200000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 182
Target Start/End: Complemental strand, 4512855 - 4512794
Alignment:
Q  121 gtgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatcttta 182  Q
    |||||| |||||| |||| |||||| ||||||||||| |||||| |||||||| | ||||||    
T  4512855 gtgtttgacttatgtttttaagacaaaatttctttttgtggatttcttaaacattgtcttta 4512794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 7 - 52
Target Start/End: Complemental strand, 10180580 - 10180535
Alignment:
Q  7 ccatttaagaacttaaaaataggtgtctccattgtggatgctctaa 52  Q
    ||||||||| |||||||||| || |||||||||||| |||||||||    
T  10180580 ccatttaagtacttaaaaatgggagtctccattgtgaatgctctaa 10180535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 26699158 - 26699210
Alignment:
Q  1 tgggacccatttaagaacttaaaaataggtgtctccattgtggatgctctaag 53  Q
    ||||| ||||||||| ||  |||||| | ||||||||||||||||||||||||    
T  26699158 tgggatccatttaagtacccaaaaatggatgtctccattgtggatgctctaag 26699210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 8e-45; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 51 - 214
Target Start/End: Complemental strand, 28514760 - 28514598
Alignment:
Q  51 aagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatt 150  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| ||||||||| || |||||||| ||||||||||||||| |||||||    
T  28514760 aagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttgaacaagtgtttgacttatattttcaaggcataatt 28514661  T
Q  151 tctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctttaattaat 214  Q
    ||||||||||| || ||||||||||  | ||||| ||| |||||||||| |||||||| |||||    
T  28514660 tctttttatgggttccttaaacaatgcccttagggcac-ttgttaacaagaccctttatttaat 28514598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 31191496 - 31191371
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| | ||| ||||||||| || |||||||| ||||||||||||||| |||||    
T  31191496 ctaagggcattgtttaagcatctaaaagtagcaacttttacattggaaattgcacggttataactttaacaagtgtttgacttatattttcaaggcataa 31191397  T
Q  149 tttctttttatggattacttaaacaat 175  Q
    ||||||||||||| || ||||||||||    
T  31191396 tttctttttatgg-ttccttaaacaat 31191371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 50 - 175
Target Start/End: Original strand, 48488413 - 48488538
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||| ||||||||| ||||||||||||||||||||| |||||||||| ||||| |||||||||||| |||||||| ||||||||||||||  ||||||    
T  48488413 taagggtattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttataacttcaacaagtgtttgacttatattttcaaagcataat 48488512  T
Q  150 ttctttttatggattacttaaacaat 175  Q
    |||||||||||| || ||||||||||    
T  48488513 ttctttttatgggttccttaaacaat 48488538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 49 - 175
Target Start/End: Original strand, 23247722 - 23247847
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||||| ||||||||||||||| |||| ||||||||||| |||||||||| | ||| |||||||||||| |||||||| ||||||||||||||| |||||    
T  23247722 ctaaggacattgtttaaacatcaaaaa-tagcaacttttgcattggaaattgaacggttataacttcaacaagtgtttgacttatattttcaaggcataa 23247820  T
Q  149 tttctttttatggattacttaaacaat 175  Q
    ||||||||||||||||||| |||||||    
T  23247821 tttctttttatggattactaaaacaat 23247847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 45 - 205
Target Start/End: Complemental strand, 10625074 - 10624915
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    ||||||||||||||||||| | ||| ||||||||| ||||||| ||||| |||| ||||| |||| |||  ||||||||||| |||| ||||||||||||    
T  10625074 tgctctaagggcattgtttcagcatataaaagtagaaacttttgcattgaaaattgtacggttatgactataataagtgtttgacttgtattttcaagac 10624975  T
Q  145 ataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccct 205  Q
    ||||||||||||| ||| ||  |||||||||  | |||| |||| |||||||||| |||||    
T  10624974 ataatttctttttgtgggttctttaaacaatgcccttagaacac-ttgttaacaagaccct 10624915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 178
Target Start/End: Original strand, 28646616 - 28646737
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttt 156  Q
    ||||||||| ||| |||||||||||||||||||||||||||| ||||| |||| |||| || || | ||| ||||||||||| |||||||||||||||||    
T  28646616 attgtttaagcatataaaagtagcaacttttacattggaaattgtacggttatgactttaacaaatttttgacttatatttttaagacataatttctttt 28646715  T
Q  157 tatggattacttaaacaatatc 178  Q
    | | ||||  ||||||||||||    
T  28646716 tgtagattctttaaacaatatc 28646737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 176
Target Start/End: Complemental strand, 19086421 - 19086302
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttt 156  Q
    |||||||||  |||||||| ||| || |||| | |||||||| ||||| | |||||||||| |||||||| ||||||||||||||| |||||||||||||    
T  19086421 attgtttaagaatctaaaaatagtaatttttgctttggaaattgtacggtaataacttcaacaagtgtttgacttatattttcaaggcataatttctttt 19086322  T
Q  157 tatggattacttaaacaata 176  Q
    ||||||||  ||||||||||    
T  19086321 tatggattttttaaacaata 19086302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 48 - 174
Target Start/End: Original strand, 40198950 - 40199077
Alignment:
Q  48 tctaagggcattgtttaaacatctaaaagtagcaactttta-cattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacat 146  Q
    |||||||||||||||||| |||||||||||||||| ||||  |||||| ||| ||| | ||||||||  || |||||| | ||||||||||||||| |||    
T  40198950 tctaagggcattgtttaagcatctaaaagtagcaattttttgcattgggaattgtatggttataactctaacaagtgtctaacttatattttcaaggcat 40199049  T
Q  147 aatttctttttatggattacttaaacaa 174  Q
    ||||||||||||||||||  ||||||||    
T  40199050 aatttctttttatggattctttaaacaa 40199077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 49 - 190
Target Start/End: Original strand, 45618441 - 45618581
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||||||||| |||||| ||| || |||||||||||||| ||||| |||| ||||  || | |||| ||||| | ||| |||||||||||||||||||||    
T  45618441 ctaagggcat-gtttaagcatatagaagtagcaacttttgcattgaaaattgtaccgttgtgactttaataaatatttgacttatattttcaagacataa 45618539  T
Q  149 tttctttttatggattacttaaacaatatctttaggacactt 190  Q
    |||| |||||||| || ||||||||||| | ||||| |||||    
T  45618540 tttccttttatgggttccttaaacaatacccttagggcactt 45618581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 37869719 - 37869820
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    ||||||||||  || ||||||||||||||||| ||||| |||| ||||| |||| |||| || |||||||| ||||||||||| || |||||||||||||    
T  37869719 cattgtttaagtatataaaagtagcaacttttgcattgaaaattgtacggttatgactttaacaagtgtttgacttatatttttaaaacataatttcttt 37869818  T
Q  156 tt 157  Q
    ||    
T  37869819 tt 37869820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 106 - 173
Target Start/End: Original strand, 8584124 - 8584191
Alignment:
Q  106 ttataacttcaataagtgtttcacttatattttcaagacataatttctttttatggattacttaaaca 173  Q
    |||||||||||| |||||||| |||||||||||||||| ||||||| |||||||||||| ||||||||    
T  8584124 ttataacttcaacaagtgtttaacttatattttcaagatataatttatttttatggattccttaaaca 8584191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 191
Target Start/End: Original strand, 5081755 - 5081897
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||| ||| |||||||||||||||||||||||||||||||||||| || | ||| | |||| |||| |  |||||||| |||| |||||  |||| ||||    
T  5081755 ctaaaggcgttgtttaaacatctaaaagtagcaacttttacattgaaatttgtagggttatgactttatcaagtgtttgacttgtatttctaagatataa 5081854  T
Q  149 tttctttttatggattacttaaacaatatctttaggacacttt 191  Q
    |||| |||| | |||  ||||||||||   |||||||||||||    
T  5081855 tttccttttgtagatatcttaaacaatgcatttaggacacttt 5081897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 56 - 190
Target Start/End: Original strand, 25119942 - 25120076
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    |||||||||| ||| ||||||||||||||||| ||||  |||| ||| | ||||||||| || |  | ||| | || ||||||||||||| |||||||||    
T  25119942 cattgtttaagcatataaaagtagcaacttttgcattataaattgtatggttataactttaacatatatttgaattgtattttcaagacacaatttcttt 25120041  T
Q  156 ttatggattacttaaacaatatctttaggacactt 190  Q
    || |||||| ||||||||||| | ||||| |||||    
T  25120042 ttgtggattccttaaacaatacccttagggcactt 25120076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 50 - 176
Target Start/End: Original strand, 45662229 - 45662353
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||| ||||||||| ||||||||||||  || ||||| ||||||||| | ||| |||| |||| || |  ||| | |||||||||||||| |||||||    
T  45662229 taagggtattgtttaagcatctaaaagtaataatttttatattggaaattgcacggttatgactttaaca--tgtatgacttatattttcaa-acataat 45662325  T
Q  150 ttctttttat-ggattacttaaacaata 176  Q
    |||||||||| ||||| |||||||||||    
T  45662326 ttctttttatgggattccttaaacaata 45662353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 157
Target Start/End: Complemental strand, 43803426 - 43803319
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacga-------ttataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    ||||||||| |||||||||| | |||||||||||||| |||| ||||||       ||||||||| |||||||||||  |||  |||||||||| |||||    
T  43803426 attgtttaagcatctaaaagcaacaacttttacattgaaaattgtacgattatgacttataactttaataagtgtttaccttgcattttcaagatataat 43803327  T
Q  150 ttcttttt 157  Q
    ||||||||    
T  43803326 ttcttttt 43803319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 56 - 176
Target Start/End: Complemental strand, 34503243 - 34503126
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    |||||||||| ||| ||||||  | |||||||  |||| |||| |||| ||||||| ||||| |||||||| | ||||||||||||||||||  || |||    
T  34503243 cattgtttaagcat-taaaagcggtaacttttgaattgaaaattgtactattataatttcaacaagtgtttgatttatattttcaagacata--tttttt 34503147  T
Q  156 ttatggattacttaaacaata 176  Q
    |||||| || |||| ||||||    
T  34503146 ttatgggtttcttagacaata 34503126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 32724387 - 32724435
Alignment:
Q  2 gggacccatttaagaacttaaaaataggtgtctccattgtggatgctct 50  Q
    |||||| ||||||| ||  ||||||||||||||||||||||||||||||    
T  32724387 gggaccaatttaagtacccaaaaataggtgtctccattgtggatgctct 32724435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 9 - 52
Target Start/End: Complemental strand, 36481971 - 36481928
Alignment:
Q  9 atttaagaacttaaaaataggtgtctccattgtggatgctctaa 52  Q
    ||||||||||| |||||||||||||||||||| ||| |||||||    
T  36481971 atttaagaactcaaaaataggtgtctccattgcggaagctctaa 36481928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 8584028 - 8584081
Alignment:
Q  44 atgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaat 98  Q
    |||||||||||| ||||||||| || |||||| ||||||||||| ||||||||||    
T  8584028 atgctctaaggggattgtttaagcaactaaaa-tagcaacttttgcattggaaat 8584081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 175
Target Start/End: Original strand, 34823562 - 34823615
Alignment:
Q  122 tgtttcacttatattttcaagacataatttctttttatggattacttaaacaat 175  Q
    ||||| ||||||||||||||||||||||||  |||||||| || ||||| ||||    
T  34823562 tgtttaacttatattttcaagacataattttcttttatgggttccttaagcaat 34823615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 190
Target Start/End: Complemental strand, 24316378 - 24316242
Alignment:
Q  54 ggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttct 153  Q
    ||||||||||||||||| | || ||| |  |||||  |||||||| ||   ||||||||||  |||  | ||| |||| ||||||||| ||| | |||||    
T  24316378 ggcattgtttaaacatccataattagtagattttatcttggaaattgtgtaattataacttttatacatatttgacttgtattttcaaaacaaactttct 24316279  T
Q  154 ttttatggattacttaaacaatatctttaggacactt 190  Q
    |||| | |||| || |||||||||| |||||||||||    
T  24316278 ttttgtagattcctcaaacaatatcattaggacactt 24316242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 36657858 - 36657818
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtgga 44  Q
    |||||||||||||||  |||||| |||||||||||||||||    
T  36657858 gacccatttaagaacccaaaaatgggtgtctccattgtgga 36657818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 1e-40; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 50 - 206
Target Start/End: Complemental strand, 23919265 - 23919110
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||||||||||||| | |||||||||| ||||||||  ||||||||| |||| ||||||||||||| |||||||| || ||||||||| |||||||||    
T  23919265 taagggcattgtttaagcctctaaaagtaacaacttttgtattggaaattgtacaattataacttcaacaagtgtttgacatatattttcgagacataat 23919166  T
Q  150 ttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctt 206  Q
    |||||||||||| || |||||||||  |||||||| ||| |||||||||||||||||    
T  23919165 ttctttttatgggttccttaaacaacgtctttagggcac-ttgttaacaaaaccctt 23919110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 55 - 206
Target Start/End: Complemental strand, 8108329 - 8108180
Alignment:
Q  55 gcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctt 154  Q
    ||||||||||| |||||||||||| |||||||| |||||||||| ||||| |||||||||||| ||||| || ||||||||||||||| |||||||||||    
T  8108329 gcattgtttaagcatctaaaagtaacaacttttgcattggaaattgtacggttataacttcaacaagtg-ttgacttatattttcaaggcataatttctt 8108231  T
Q  155 tttatggattacttaaacaatatctttaggacactttgttaacaaaaccctt 206  Q
    ||| ||  || |||||||||| || ||||| ||| ||||| |||||||||||    
T  8108230 tttttgtgttccttaaacaatgtccttagggcac-ttgttcacaaaaccctt 8108180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 50 - 205
Target Start/End: Original strand, 45249354 - 45249508
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||||| ||||| |||| |||| || || ||||| |||| |||||||||||||||||    
T  45249354 taagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacggttatgactttaacaaatgtttgacttgtattttcaagacataat 45249453  T
Q  150 ttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccct 205  Q
    |||||||| ||| || ||||||||||  | ||||| ||| |||||||||| |||||    
T  45249454 ttctttttgtgggttccttaaacaatgcccttagggcac-ttgttaacaagaccct 45249508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 56 - 175
Target Start/End: Original strand, 53466229 - 53466348
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    ||||||||||  ||||||||| | |||||||| ||||| |||| ||||||||||||||||||||||||||| ||||||||||| ||  ||||||||||||    
T  53466229 cattgtttaagtatctaaaagaaacaacttttgcattgaaaattgtacgattataacttcaataagtgtttgacttatatttttaaagcataatttcttt 53466328  T
Q  156 ttatggattacttaaacaat 175  Q
    |||| | || ||||||||||    
T  53466329 ttataggttccttaaacaat 53466348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 48993484 - 48993361
Alignment:
Q  51 aagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatt 150  Q
    ||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| || | |||| || ||| |||| |||| ||||||||||||||||||    
T  48993484 aagggcattgtttaagcatctaaaagtagcaactttttcattggaaattgtacg-ttgtgactttaacaagggtttgacttttattttcaagacataatt 48993386  T
Q  151 tctttttatggattacttaaacaat 175  Q
    || | || ||| || ||||||||||    
T  48993385 tcctcttgtgggttccttaaacaat 48993361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 6488912 - 6488787
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||||||||||||| ||| ||||||||||||||||| ||||| |||| |||| ||||| |||| || |||||||  |||| |||||| |||| |||||    
T  6488912 taagggcattgtttaagcatttaaaagtagcaacttttgcattgaaaattgtactattatgactttaacaagtgttgtacttgtatttttaagatataat 6488813  T
Q  150 ttctttttatggattacttaaacaat 175  Q
     ||||||| | | || ||||||||||    
T  6488812 ctctttttgtaggttccttaaacaat 6488787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 30403233 - 30403356
Alignment:
Q  67 catctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttttatggattac 166  Q
    |||| |||||||  |||||||||||| ||||| |||  ||||| ||||  | | |||| | |||| || |||||||||| | |||||||||||||||| |    
T  30403233 catccaaaagtaataacttttacattagaaattgtataattatgacttttacatgtgtctaacttgtagtttcaagacaaattttctttttatggatttc 30403332  T
Q  167 ttaaacaatatctttaggacactt 190  Q
    ||| ||||| || |||||||||||    
T  30403333 ttatacaatgtcgttaggacactt 30403356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 47595563 - 47595631
Alignment:
Q  122 tgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactt 190  Q
    ||||| |||||||||||||| |||    || ||||||||||||||||||||||| | ||||||||||||    
T  47595563 tgtttgacttatattttcaaaacacggattgtttttatggattacttaaacaatttttttaggacactt 47595631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 98
Target Start/End: Original strand, 53751654 - 53751697
Alignment:
Q  55 gcattgtttaaacatctaaaagtagcaacttttacattggaaat 98  Q
    ||||||||||| |||| |||| ||||||||||||||||||||||    
T  53751654 gcattgtttaagcatccaaaaatagcaacttttacattggaaat 53751697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 206
Target Start/End: Original strand, 31580366 - 31580443
Alignment:
Q  128 acttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctt 206  Q
    |||||||||||||| ||||||||| ||||| ||| ||  |||||||||| | ||| ||||| |||||||||| ||||||    
T  31580366 acttatattttcaaaacataatttttttttgtgggttctttaaacaatacccttaagacac-ttgttaacaagaccctt 31580443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 191
Target Start/End: Complemental strand, 39611752 - 39611611
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||| ||||||||||| ||| | |||||||||| |||| || || |||| ||||  |||| |||| || |  ||||| | || |||||||||  | |||    
T  39611752 ctaagagcattgtttaagcattttaaagtagcaatttttgcactgaaaattgtacagttatgactttaacatatgtttgatttgtattttcaatgcgtaa 39611653  T
Q  149 tttctttttatggattacttaaacaatatctttaggacacttt 191  Q
    ||| ||||||||  || ||||||||||||||||||| ||||||    
T  39611652 ttt-tttttatgagtttcttaaacaatatctttagggcacttt 39611611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 178
Target Start/End: Original strand, 26043451 - 26043508
Alignment:
Q  121 gtgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatc 178  Q
    |||||| |||||||||||||||||| ||  ||||||| |||||| |||||| ||||||    
T  26043451 gtgtttaacttatattttcaagacaaaacctctttttgtggattccttaaagaatatc 26043508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 41211811 - 41211856
Alignment:
Q  8 catttaagaacttaaaaataggtgtctccattgtggatgctctaag 53  Q
    |||||||| || ||||| ||| ||||||||||||||||||||||||    
T  41211811 catttaagtacctaaaattagatgtctccattgtggatgctctaag 41211856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29950754 - 29950707
Alignment:
Q  1 tgggacccatttaagaacttaaaaataggtgtctccattgtggatgctc 49  Q
    |||||||||| |||||||  |||||| ||||||||||||||||||||||    
T  29950754 tgggacccatataagaacccaaaaat-ggtgtctccattgtggatgctc 29950707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 29999908 - 29999861
Alignment:
Q  1 tgggacccatttaagaacttaaaaataggtgtctccattgtggatgctc 49  Q
    |||||||||| |||||||  |||||| ||||||||||||||||||||||    
T  29999908 tgggacccatataagaacccaaaaat-ggtgtctccattgtggatgctc 29999861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 104
Target Start/End: Complemental strand, 33865353 - 33865309
Alignment:
Q  60 gtttaaacatctaaaagtagcaacttttacattggaaatcgtacg 104  Q
    |||||| ||| ||||||||||||||||| |||||||||| |||||    
T  33865353 gtttaagcatataaaagtagcaacttttgcattggaaattgtacg 33865309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 42226025 - 42225965
Alignment:
Q  130 ttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactt 190  Q
    |||| ||||||||| | |||||||| | || |||| |||||||||| ||||||||||||||    
T  42226025 ttatgttttcaagataaaatttcttataatagattccttaaacaatgtctttaggacactt 42225965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 83; Significance: 2e-39; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 36904086 - 36903960
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||| |||| |||| ||||||||||| |||| ||||||||||||||||    
T  36904086 ctaagggcattgtttaagcatctaaaagtagcaacttttgcattggaaattgtacggttatgactttaataagtgtttgacttgtattttcaagacataa 36903987  T
Q  149 tttctttttatggattacttaaacaat 175  Q
    ||||||||| ||| || ||||||||||    
T  36903986 tttctttttgtgggttccttaaacaat 36903960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 50 - 206
Target Start/End: Original strand, 223885 - 224040
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||| ||||||||||| |||||||||||||||| |||| ||||| |||| ||||| ||||||||||||||||||||| |||||||||||||||  |||||    
T  223885 taagagcattgtttaagcatctaaaagtagcaatttttgcattgaaaattgtacggttataacttcaataagtgtttgacttatattttcaaggtataat 223984  T
Q  150 ttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctt 206  Q
    |||||||||||  || ||||||||||   |||||| ||| |||||||||| ||||||    
T  223985 ttctttttatgagttccttaaacaatgcatttagggcac-ttgttaacaagaccctt 224040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 38402665 - 38402535
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    |||||||||  |||||||||  |||||||||||||||||||||  ||||||||| ||||| |||| |||| || |||||||| |||| ||||||||| ||    
T  38402665 tgctctaagaacattgtttaggcatctaaaagtagcaacttttgtattggaaattgtacggttatgactttaagaagtgtttaacttgtattttcaaaac 38402566  T
Q  145 ataatttctttttatggattacttaaacaat 175  Q
    |||||||||||||||||||| ||||||||||    
T  38402565 ataatttctttttatggattccttaaacaat 38402535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 57 - 174
Target Start/End: Complemental strand, 4428895 - 4428778
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttt 156  Q
    ||||||||| |||||||  |||||||||||||||||| ||||  |||| |||| |||| ||||| | ||| |||||||| ||||||||||||||||||||    
T  4428895 attgtttaagcatctaattgtagcaacttttacattgaaaattatacggttatgactttaataaatatttgacttatatcttcaagacataatttctttt 4428796  T
Q  157 tatggattacttaaacaa 174  Q
    |||||||| |||||||||    
T  4428795 tatggattccttaaacaa 4428778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 204
Target Start/End: Complemental strand, 39791648 - 39791502
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttt 156  Q
    ||||||||| ||| |||||||||||| ||||| ||| ||||| ||||||| || |||| || || ||||| |||| ||||||||| ||||||||||||||    
T  39791648 attgtttaagcatataaaagtagcaatttttatattagaaattgtacgataatgactttaacaaatgtttgacttgtattttcaaaacataatttctttt 39791549  T
Q  157 tatggattacttaaacaatatctttaggacactttgttaacaaaaccc 204  Q
    | ||||||  |||||||||| | ||||||||| |||||||||| ||||    
T  39791548 tgtggattctttaaacaatacccttaggacac-ttgttaacaagaccc 39791502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 49 - 157
Target Start/End: Original strand, 9047593 - 9047701
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||| ||||||||||| ||| |||||||| |||||||||||||| |||| ||||| |||| |||| || |||||||| |||| ||||||||| ||||||    
T  9047593 ctaagagcattgtttaatcatataaaagtaacaacttttacattgaaaattgtacggttatgactttaacaagtgtttgacttgtattttcaaaacataa 9047692  T
Q  149 tttcttttt 157  Q
    |||||||||    
T  9047693 tttcttttt 9047701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 45 - 175
Target Start/End: Complemental strand, 15335962 - 15335832
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    |||||| |||||||||||||| |||||||||||||||| |||| |||| ||||| |||| ||||| |||| || |  ||||| |||| ||||||||||||    
T  15335962 tgctctcagggcattgtttaagcatctaaaagtagcaatttttgcatttgaaattgtacaattatgactttaacatatgtttgacttgtattttcaagac 15335863  T
Q  145 ataatttctttttatggattacttaaacaat 175  Q
    | || |||| ||| ||| || ||||||||||    
T  15335862 aaaaattctctttgtgggttccttaaacaat 15335832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 48 - 175
Target Start/End: Complemental strand, 19955203 - 19955076
Alignment:
Q  48 tctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacata 147  Q
    ||||| || ||| ||||| ||| |||||||||||||||||  |||||||||  || |||||| |||| || |||||||| | || ||||||||| |||||    
T  19955203 tctaaaggtattatttaagcatataaaagtagcaacttttttattggaaattatatgattatgactttaacaagtgtttgatttgtattttcaaaacata 19955104  T
Q  148 atttctttttatggattacttaaacaat 175  Q
    |||||||||| ||| || ||||||||||    
T  19955103 atttctttttgtgggttccttaaacaat 19955076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 60 - 176
Target Start/End: Complemental strand, 41283450 - 41283335
Alignment:
Q  60 gtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttttat 159  Q
    |||||||||||||||||||  |||||||  |||| |||| ||||| ||||||||| || || | ||| |||||||||||||||  |||||||||||||||    
T  41283450 gtttaaacatctaaaagtattaacttttgtattgaaaattgtacggttataactt-aacaaatatttgacttatattttcaaggtataatttctttttat 41283352  T
Q  160 ggattacttaaacaata 176  Q
    |  || |||||||||||    
T  41283351 gagttccttaaacaata 41283335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 199
Target Start/End: Complemental strand, 6563146 - 6563054
Alignment:
Q  106 ttataacttcaataagtgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaa 199  Q
    |||||| |||||||||||||| | ||||||||| || | ||||||| ||||||||| || ||||||||||||| ||| |||| |||||||||||    
T  6563146 ttataatttcaataagtgtttgatttatatttttaaaatataatttttttttatgggttccttaaacaatatccttaagaca-tttgttaacaa 6563054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 4 - 50
Target Start/End: Complemental strand, 14772895 - 14772849
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtggatgctct 50  Q
    |||||||||||||||| |||||| |||||||||||||| ||||||||    
T  14772895 gacccatttaagaactcaaaaatgggtgtctccattgtagatgctct 14772849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 50
Target Start/End: Original strand, 11922098 - 11922144
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtggatgctct 50  Q
    |||||||||||| | ||||||||  ||||||||||||||||||||||    
T  11922098 gacccatttaagtaattaaaaatgagtgtctccattgtggatgctct 11922144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 176
Target Start/End: Original strand, 14812273 - 14812395
Alignment:
Q  54 ggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttct 153  Q
    |||||||||||| |||  |||||||  ||||||||||||| |||| ||   ||||||||||  | |  ||||| |||| ||||||||||| | |||||||    
T  14812273 ggcattgtttaagcattcaaaagtattaacttttacattgaaaattgtgtaattataacttttacatatgtttgacttgtattttcaagataaaatttct 14812372  T
Q  154 ttttatggattacttaaacaata 176  Q
    |||| | | || |||||||||||    
T  14812373 ttttgttgtttccttaaacaata 14812395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 133 - 190
Target Start/End: Original strand, 39491075 - 39491132
Alignment:
Q  133 tattttcaagacataatttctttttatggattacttaaacaatatctttaggacactt 190  Q
    |||||| ||||||  |||||||||||||||||  ||||||||||| ||||| ||||||    
T  39491075 tattttgaagacaacatttctttttatggattctttaaacaatatttttagaacactt 39491132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 52
Target Start/End: Original strand, 9583300 - 9583344
Alignment:
Q  8 catttaagaacttaaaaataggtgtctccattgtggatgctctaa 52  Q
    |||||||||||  ||||||||| || |||||||||||||||||||    
T  9583300 catttaagaacccaaaaataggcgtgtccattgtggatgctctaa 9583344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 74; Significance: 5e-34; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 50 - 175
Target Start/End: Complemental strand, 38573414 - 38573289
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataat 149  Q
    |||||| |||||||||  |||||||||||| ||||||| |||||||||| ||||| |||||||||||| || ||||| ||||||||||||||| ||||||    
T  38573414 taagggtattgtttaagtatctaaaagtagtaacttttgcattggaaattgtacggttataacttcaacaaatgtttgacttatattttcaaggcataat 38573315  T
Q  150 ttctttttatggattacttaaacaat 175  Q
    |||||||||||| || ||||||||||    
T  38573314 ttctttttatgggttccttaaacaat 38573289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 56 - 159
Target Start/End: Complemental strand, 7642716 - 7642613
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    |||||||||||||||||||| ||||||||||| ||||| |||| ||||| |||||||||||| |||||||| |||||||||||||| |||||||||||||    
T  7642716 cattgtttaaacatctaaaattagcaacttttgcattgtaaattgtacggttataacttcaacaagtgtttgacttatattttcaaaacataatttcttt 7642617  T
Q  156 ttat 159  Q
    ||||    
T  7642616 ttat 7642613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 49 - 206
Target Start/End: Complemental strand, 13018612 - 13018456
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||||||||||||||| ||| ||||||||||||||||| |||||||||| |||||| ||| |||| || || ||||| |||||||||||||||| |||     
T  13018612 ctaagggcattgtttaagcatataaaagtagcaacttttgcattggaaattgtacgaatatgactttaacaaatgtttgacttatattttcaagatatat 13018513  T
Q  149 tttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctt 206  Q
    |||  |||||||| || ||||||||||  | ||||||||| |||||||||| ||||||    
T  13018512 ttttcttttatgggttccttaaacaatgcccttaggacac-ttgttaacaagaccctt 13018456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 52 - 139
Target Start/End: Complemental strand, 44395769 - 44395682
Alignment:
Q  52 agggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttc 139  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| ||||| |||||||||||| |||||||| ||||||| ||||    
T  44395769 agggcattgtttaaacatttaaaagtagcaacttttacattggaaattgtacgtttataacttcaacaagtgtttgacttataatttc 44395682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 36642698 - 36642819
Alignment:
Q  54 ggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttct 153  Q
    |||||||||||| |||||||||||| ||||||||||||||||| | |||||||||| |||| |  || ||||| |||| ||||||||||||||||||||     
T  36642698 ggcattgtttaagcatctaaaagtaacaacttttacattggaatttgtacgattatgactttatcaaatgtttgacttgtattttcaagacataatttcc 36642797  T
Q  154 ttttatggattacttaaacaat 175  Q
    |||| | |||  ||||||||||    
T  36642798 ttttgtagataccttaaacaat 36642819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 12978369 - 12978258
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||||||||||||||||  || |||||||||||| |||| | |||||||| ||||| |  | |||| || |||||||| | || ||||||||||||||||    
T  12978369 ctaagggcattgtttaagaatataaaagtagcaatttttgccttggaaattgtacggtcgtgactttaacaagtgtttgatttgtattttcaagacataa 12978270  T
Q  149 tttctttttatg 160  Q
    ||||||||||||    
T  12978269 tttctttttatg 12978258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 44 - 199
Target Start/End: Original strand, 12763252 - 12763402
Alignment:
Q  44 atgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaaga 143  Q
    |||| ||||||||||||||||| ||| ||||| |||||| |||| ||||     | ||||  |||||||||||| || | ||| ||||||||||||||      
T  12763252 atgccctaagggcattgtttaagcatttaaaattagcaatttttgcattt----ttgtactgttataacttcaacaaatatttgacttatattttcaaag 12763347  T
Q  144 cataatttctttttatggattacttaaacaatatctttaggacactttgttaacaa 199  Q
    |||| ||||||||||||| || ||||||||||  |||||||||| |||||||||||    
T  12763348 catactttctttttatgggttccttaaacaatgcctttaggaca-tttgttaacaa 12763402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 50 - 199
Target Start/End: Original strand, 11611487 - 11611637
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaactttta-cattggaaatcgtacgattataacttcaataagtgtttcacttatatttt-caagacata 147  Q
    |||| ||| ||||||| ||| |||||||||||||||||  |||||  |||  |||| | |||||||||| |||||||| |||||| |||| |||  ||||    
T  11611487 taagagcaatgtttaagcatataaaagtagcaactttttgcattgagaattatacggtaataacttcaacaagtgtttaacttatttttttcaaagcata 11611586  T
Q  148 atttctttttatggattacttaaacaatatctttaggacactttgttaacaa 199  Q
    || ||||||||||| || |||||||||| || ||||||||| ||||||||||    
T  11611587 atatctttttatgggttccttaaacaatgtccttaggacac-ttgttaacaa 11611637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 49 - 175
Target Start/End: Complemental strand, 23518323 - 23518197
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||||||| |||||||| ||||||||| ||| ||||||| ||||| |||| ||||| ||   |||| ||||| | ||| | ||||||||| |||| ||||    
T  23518323 ctaagggcgttgtttaagcatctaaaaatagtaacttttgcattgaaaattgtacggttcagactttaataaatatttgatttatatttttaagatataa 23518224  T
Q  149 tttctttttatggattacttaaacaat 175  Q
    ||||||||| ||| || ||||||||||    
T  23518223 tttctttttgtgggttccttaaacaat 23518197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 50 - 93
Target Start/End: Original strand, 33015582 - 33015625
Alignment:
Q  50 taagggcattgtttaaacatctaaaagtagcaacttttacattg 93  Q
    |||||||||||||||| ||||||||||||||||||||| |||||    
T  33015582 taagggcattgtttaagcatctaaaagtagcaacttttgcattg 33015625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 128 - 214
Target Start/End: Complemental strand, 16346054 - 16345969
Alignment:
Q  128 acttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctttaattaat 214  Q
    |||||||||||||||||| ||||| | || | ||||||||| | ||||  ||||||||||| |||||| ||||||||||| ||||||    
T  16346054 acttatattttcaagacaaaatttttattaaaggattacttgaccaatgcctttaggacac-ttgttagcaaaaccctttcattaat 16345969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 106 - 204
Target Start/End: Original strand, 24999439 - 24999536
Alignment:
Q  106 ttataacttcaataagtgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccc 204  Q
    |||| |||| || |||||||| |||| ||||||||||||||||||||||||| ||| || ||| ||||||  | ||||| ||| |||||||||| ||||    
T  24999439 ttatgactttaacaagtgtttgacttgtattttcaagacataatttctttttgtgggttcctttaacaatgcccttagggcac-ttgttaacaagaccc 24999536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 13629006 - 13628957
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtggatgctctaag 53  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||||||    
T  13629006 gacccatttaagaactcaaaaatggaggtctccattgtggatgctctaag 13628957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 4 - 53
Target Start/End: Complemental strand, 13729418 - 13729369
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtggatgctctaag 53  Q
    |||||||||||||||| |||||| |  |||||||||||||||||||||||    
T  13729418 gacccatttaagaactcaaaaatggaggtctccattgtggatgctctaag 13729369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 57 - 109
Target Start/End: Original strand, 13079294 - 13079346
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattat 109  Q
    ||||||||| ||||||||||||| ||||||||||| |||||| |||| |||||    
T  13079294 attgtttaagcatctaaaagtagtaacttttacataggaaattgtacaattat 13079346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 7 - 50
Target Start/End: Original strand, 23982406 - 23982449
Alignment:
Q  7 ccatttaagaacttaaaaataggtgtctccattgtggatgctct 50  Q
    ||||||||||||  |||||||||||||||||||||| |||||||    
T  23982406 ccatttaagaacccaaaaataggtgtctccattgtgaatgctct 23982449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 1155108 - 1155055
Alignment:
Q  2 gggacccatttaagaacttaaaaataggtgtctccattgtggatgctctaaggg 55  Q
    |||| ||||||||||||  |||||| | |||||| |||||||||||||||||||    
T  1155108 gggatccatttaagaaccaaaaaattgttgtctcgattgtggatgctctaaggg 1155055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 207
Target Start/End: Complemental strand, 10328720 - 10328636
Alignment:
Q  122 tgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaacccttt 207  Q
    ||||| ||||||||||  |||||| ||||||||||||| |||| ||||||||| | | ||| ||||| ||||||  ||||||||||    
T  10328720 tgtttgacttatatttgtaagacaaaatttctttttatagatttcttaaacaacacccttacgacac-ttgttagaaaaacccttt 10328636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 56
Target Start/End: Original strand, 4326067 - 4326119
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtggatgctctaagggc 56  Q
    |||||||||||| |   ||||||||||||||| |||||||||||||| |||||    
T  4326067 gacccatttaagtatccaaaaataggtgtctcaattgtggatgctcttagggc 4326119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 53
Target Start/End: Complemental strand, 37673721 - 37673677
Alignment:
Q  9 atttaagaacttaaaaataggtgtctccattgtggatgctctaag 53  Q
    ||||||||||  |||||| | ||||||||||||||||||||||||    
T  37673721 atttaagaacccaaaaatggatgtctccattgtggatgctctaag 37673677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 35 - 180
Target Start/End: Original strand, 606661 - 606806
Alignment:
Q  35 ccattgtggatgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttata 134  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||| ||||  |||| |||| ||||| | ||| | |||||    
T  606661 ccattgtggatgctctaagggcattgtttaagcatctaaaaatagcaatttttacattggaaattgtacctttattactttaataaatatttgatttata 606760  T
Q  135 ttttcaagacataatttctttttatggattacttaaacaatatctt 180  Q
    ||||  ||| |||||||||||||||| ||| |||||||||| ||||    
T  606761 tttttgagatataatttctttttatgaattccttaaacaatgtctt 606806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 49 - 204
Target Start/End: Complemental strand, 34339029 - 34338875
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||||| ||||||||| ||||||||| ||||||||||| |||||||||  ||  | |||||||||||| |||||||| ||||||||||||||| |||||    
T  34339029 ctaagggtattgtttaagcatctaaaaatagcaacttttgcattggaaagtgtgtggttataacttcaacaagtgtttgacttatattttcaaggcataa 34338930  T
Q  149 tttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccc 204  Q
    ||||||||||||| ||  ||||||||| || ||||| ||| |||||||||| ||||    
T  34338929 tttctttttatgggttctttaaacaatgtccttagggcac-ttgttaacaagaccc 34338875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 45 - 199
Target Start/End: Complemental strand, 15477015 - 15476862
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    ||||||||| ||||||||||| ||| |||||||||||| ||||  |||| |||| |||||| ||| |||| || |||||||| |||||||||||||||||    
T  15477015 tgctctaagagcattgtttaagcatataaaagtagcaatttttttattgaaaattgtacgagtatgactttaacaagtgtttgacttatattttcaagac 15476916  T
Q  145 ataatttctttttatggattacttaaacaatatctttaggacactttgttaacaa 199  Q
    ||| || | |||||||  || |||||||||| || |||||| || ||||||||||    
T  15476915 atatttcccttttatgcgttccttaaacaatgtccttaggatac-ttgttaacaa 15476862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 54 - 175
Target Start/End: Original strand, 1088209 - 1088330
Alignment:
Q  54 ggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttct 153  Q
    |||||||||||| |||||||||||||||||| ||| ||| ||||| |||||||||| | || ||||  ||||| ||||||||||| |||| |||||||||    
T  1088209 ggcattgtttaagcatctaaaagtagcaactcttatattagaaattgtacgattatgattttaatatatgtttaacttatatttttaagatataatttct 1088308  T
Q  154 ttttatggattacttaaacaat 175  Q
    |||| ||| || ||||||||||    
T  1088309 ttttgtgggttccttaaacaat 1088330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 45 - 206
Target Start/End: Complemental strand, 8713906 - 8713747
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||||  ||| ||||| || |  |||| |||| ||  | ||||| |||| ||||||||||||    
T  8713906 tgctctaagggtattgtttaagcatttaaaagtaacaacttttgtattagaaattgtgcagttatgacttaaaata-tgtttgacttgtattttcaagac 8713808  T
Q  145 ataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctt 206  Q
    | ||||| |||| ||||||| ||||||||||||| ||||||||  | |||||||||||||||    
T  8713807 aaaattttttttaatggatttcttaaacaatatccttaggaca-gtggttaacaaaaccctt 8713747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 55 - 175
Target Start/End: Complemental strand, 25713469 - 25713350
Alignment:
Q  55 gcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctt 154  Q
    ||||||||||| ||||||||| || |||||||| |||||||| | |||||||||| |||| || | || |||   |||||||||||||| ||||||||||    
T  25713469 gcattgtttaagcatctaaaa-taacaacttttgcattggaacttgtacgattatgactttaacatgtatttgctttatattttcaagagataatttctt 25713371  T
Q  155 tttatggattacttaaacaat 175  Q
    ||| ||  || ||||||||||    
T  25713370 tttgtgagttccttaaacaat 25713350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 134
Target Start/End: Original strand, 10284980 - 10285059
Alignment:
Q  55 gcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttata 134  Q
    ||||||||||| ||||||||||||| |||||||  ||||||||| ||||| |||||||||||| || | ||| |||||||    
T  10284980 gcattgtttaagcatctaaaagtagtaacttttgtattggaaattgtacggttataacttcaacaaatatttgacttata 10285059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 56 - 207
Target Start/End: Original strand, 26362248 - 26362398
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    |||| ||||| ||| |||||||||||| ||||  ||| ||||| |||||| ||| | || || |||||||| | |||||||||||| ||||  |||  ||    
T  26362248 cattctttaagcatataaaagtagcaatttttgtattagaaattgtacgagtatgattttaacaagtgtttaatttatattttcaatacatgtttttctt 26362347  T
Q  156 ttatggattacttaaacaatatctttaggacactttgttaacaaaacccttt 207  Q
    || ||| || ||||||||||||| ||||| ||| |||||||||| |||||||    
T  26362348 ttgtgggttccttaaacaatatccttagggcac-ttgttaacaagacccttt 26362398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 190
Target Start/End: Original strand, 32292237 - 32292352
Alignment:
Q  75 agtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttctttttatggattacttaaacaa 174  Q
    |||||||||||||  | || |||| ||| | ||||||||| || || ||||| |||||||||||||| || |||||| ||||||| | || |||||||||    
T  32292237 agtagcaacttttgtaatgaaaattgtaggtttataactttaacaaatgtttgacttatattttcaaaacgtaatttatttttataggttccttaaacaa 32292336  T
Q  175 tatctttaggacactt 190  Q
    || | |||||||||||    
T  32292337 tacccttaggacactt 32292352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 5 - 65
Target Start/End: Complemental strand, 41520830 - 41520770
Alignment:
Q  5 acccatttaagaacttaaaaataggtgtctccattgtggatgctctaagggcattgtttaa 65  Q
    ||||||||||||||  |||||| | ||||||||||||||||||||| || |||||||||||    
T  41520830 acccatttaagaaccaaaaaatggatgtctccattgtggatgctcttagagcattgtttaa 41520770  T

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Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 204
Target Start/End: Original strand, 16054383 - 16054518
Alignment:
Q  67 catctaaaagtagcaacttttacattggaaatcgtacg-attataacttcaataagtgtttcacttatattttcaagacataatttctttttatggatta 165  Q
    ||||||||||| | ||||||||||||| ||||  || | ||||| ||||  ||| |||||| |||| |||||| || ||| ||||||||||| ||| ||     
T  16054383 catctaaaagtggtaacttttacattgaaaat--tatgtattatgacttttatatgtgtttgacttgtattttaaaaacaaaatttctttttgtgggttt 16054480  T
Q  166 cttaaacaatatctttaggacactttgttaacaaaaccc 204  Q
    |||||||||| || ||||||||| |||||| ||||||||    
T  16054481 cttaaacaatgtccttaggacac-ttgttagcaaaaccc 16054518  T

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Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 106 - 175
Target Start/End: Complemental strand, 14663047 - 14662978
Alignment:
Q  106 ttataacttcaataagtgtttcacttatattttcaagacataatttctttttatggattacttaaacaat 175  Q
    |||||||||||| |||||||| ||||||||||| ||  |||||||| ||||||||  || ||||||||||    
T  14663047 ttataacttcaacaagtgtttgacttatatttttaatgcataatttttttttatgagttccttaaacaat 14662978  T

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Target: chr5; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 161
Target Start/End: Complemental strand, 31006458 - 31006345
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    |||||||| || ||||||||| |||  | |||||| |||| ||| |||| || | |||  |||||||||||||  | ||||| |||||||||||||||||    
T  31006458 tgctctaaaggtattgtttaagcat--agaagtagtaactcttatattgaaagttgtataattataacttcaacga-tgtttgacttatattttcaagac 31006362  T
Q  145 ataatttctttttatgg 161  Q
    || ||||||||||||||    
T  31006361 atgatttctttttatgg 31006345  T

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Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 182
Target Start/End: Original strand, 29045332 - 29045458
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataatttcttt 155  Q
    |||||||||| ||||||||||||| || |||| ||||  ||||  ||   |||| |||| || |||||||| | ||||||||| || | |||||||||||    
T  29045332 cattgtttaaccatctaaaagtagtaatttttgcattaaaaattatatagttatgactttaacaagtgtttgatttatatttttaatatataatttcttt 29045431  T
Q  156 ttatggattacttaaacaatatcttta 182  Q
    || ||| || |||||| ||||| ||||    
T  29045432 ttgtgggttccttaaataatattttta 29045458  T

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Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 205
Target Start/End: Original strand, 10285333 - 10285403
Alignment:
Q  133 tattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccct 205  Q
    ||||||||| ||||||||||||||||||| || ||||||||||  | ||||| ||| |||||||||| |||||    
T  10285333 tattttcaaaacataatttctttttatgg-ttccttaaacaatgcccttagggcac-ttgttaacaagaccct 10285403  T

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Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 213
Target Start/End: Original strand, 37447299 - 37447390
Alignment:
Q  121 gtgtttcacttatattttcaagacataatttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctttaattaa 213  Q
    |||||| |||||||||||||||||| | ||||||||| | | || |||||||||| |  ||||| ||| |||||| ||| |||||||| ||||    
T  37447299 gtgtttgacttatattttcaagacaaagtttctttttgtaggttccttaaacaatgttcttagggcac-ttgttagcaagaccctttatttaa 37447390  T

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Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 49 - 215
Target Start/End: Original strand, 6100657 - 6100822
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    |||||| |||||||||| ||| ||||||||||||||||| ||||| ||||  || | |||| |||| || |||||||| || | ||||||||||||||||    
T  6100657 ctaaggacattgtttaagcatataaaagtagcaacttttgcattgaaaattatagggttatgactttaagaagtgtttgacatgtattttcaagacataa 6100756  T
Q  149 tttctttttatggattacttaaacaatatctttaggacactttgttaacaaaaccctttaattaatt 215  Q
    |||| |||| ||| || ||||||||||  | ||||| ||| |||||||||| ||||| |||||||||    
T  6100757 tttccttttgtgggttccttaaacaatgcccttagggcac-ttgttaacaagaccctataattaatt 6100822  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 32147862 - 32148020
Alignment:
Q  49 ctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacataa 148  Q
    ||||||||||||||||| ||| ||||||||| || |||| ||||| |||| ||||| |||| |||| ||||| | ||| | || ||||||||| ||||||    
T  32147862 ctaagggcattgtttaagcatataaaagtagtaatttttgcattgcaaattgtacggttatgactttaataaatatttgatttgtattttcaaaacataa 32147961  T
Q  149 tttctttttatggattacttaaacaatatctttaggacactttgttaacaaaacccttta 208  Q
    ||||||||| ||||||  ||||||||   | | ||||||| |||||||||| ||||||||    
T  32147962 tttctttttgtggattctttaaacaaagccatcaggacac-ttgttaacaagacccttta 32148020  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 57 - 205
Target Start/End: Original strand, 33134189 - 33134337
Alignment:
Q  57 attgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttca-cttatattttcaagacataatttcttt 155  Q
    ||||||||||||||||||||||  || |||| |||| ||||| ||||  |||||||||||| || ||||| | ||||||||||  || |||||||| |||    
T  33134189 attgtttaaacatctaaaagtataaatttttgcattagaaattgtacagttataacttcaacaaatgtttgaccttatatttttgaggcataattttttt 33134288  T
Q  156 ttatggattacttaaacaatatctttaggacactttgttaacaaaaccct 205  Q
    |||||| || ||||||||||  ||||| ||||| |||||||||| |||||    
T  33134289 ttatgggttccttaaacaatgcctttaagacac-ttgttaacaagaccct 33134337  T

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Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 4 - 55
Target Start/End: Complemental strand, 32658395 - 32658344
Alignment:
Q  4 gacccatttaagaacttaaaaataggtgtctccattgtggatgctctaaggg 55  Q
    ||||||||||||||| |||||||  ||||||||| |||||||||||| ||||    
T  32658395 gacccatttaagaacctaaaaatgagtgtctccactgtggatgctcttaggg 32658344  T

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Target: scaffold0002 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 45 - 175
Target Start/End: Original strand, 433865 - 433993
Alignment:
Q  45 tgctctaagggcattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagac 144  Q
    ||||||||||  ||||||||| ||| ||||||||||||||||   |||| |||| |||  ||||| |||| || |||||||| |||||||||||||||||    
T  433865 tgctctaaggatattgtttaagcatataaaagtagcaactttcgtattgtaaattgta--attatgactttaacaagtgtttgacttatattttcaagac 433962  T
Q  145 ataatttctttttatggattacttaaacaat 175  Q
    ||||||| ||||| ||| || ||||||||||    
T  433963 ataatttttttttgtgggtttcttaaacaat 433993  T

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Target: scaffold0020 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 56 - 147
Target Start/End: Original strand, 171589 - 171680
Alignment:
Q  56 cattgtttaaacatctaaaagtagcaacttttacattggaaatcgtacgattataacttcaataagtgtttcacttatattttcaagacata 147  Q
    |||||||||| ||||||||||||||||||||| ||||  |||| || |  || | |||| || | |||||| |||| |||||||||||||||    
T  171589 cattgtttaagcatctaaaagtagcaacttttgcattaaaaattgttcagttgtgactttaacatgtgtttgacttgtattttcaagacata 171680  T

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