View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2099_high_6 (Length: 238)

Name: NF2099_high_6
Description: NF2099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2099_high_6
NF2099_high_6
[»] chr1 (3 HSPs)
chr1 (133-222)||(45807449-45807538)
chr1 (1-84)||(45807313-45807395)
chr1 (16-76)||(1243452-1243512)
[»] chr6 (3 HSPs)
chr6 (1-85)||(18235210-18235294)
chr6 (4-83)||(2045163-2045240)
chr6 (42-78)||(2399085-2399121)
[»] chr8 (1 HSPs)
chr8 (5-83)||(26149217-26149295)
[»] chr4 (3 HSPs)
chr4 (6-84)||(11975491-11975569)
chr4 (5-78)||(32151361-32151434)
chr4 (5-78)||(50376070-50376142)
[»] chr7 (1 HSPs)
chr7 (5-78)||(25303675-25303748)
[»] chr2 (2 HSPs)
chr2 (22-85)||(9467863-9467926)
chr2 (51-84)||(1537994-1538027)
[»] chr3 (2 HSPs)
chr3 (22-85)||(32993904-32993965)
chr3 (1-78)||(3650612-3650688)
[»] chr5 (3 HSPs)
chr5 (5-79)||(26682878-26682951)
chr5 (5-81)||(41700905-41700981)
chr5 (5-85)||(36243957-36244037)


Alignment Details
Target: chr1 (Bit Score: 78; Significance: 2e-36; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 133 - 222
Target Start/End: Original strand, 45807449 - 45807538
Alignment:
Q  133 ctccgccactttctcacattagaaacatgttctccaaatatgtagagaaacaatgtgtcctcttttgcaaaaatatggtgttaactattt 222  Q
    |||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45807449 ctccgccactttctcacactagaaagatgttctccagatatgtagagaaacaatgtgtcctcttttgcaaaaatatggtgttaactattt 45807538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 45807313 - 45807395
Alignment:
Q  1 acaaaccttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatacta 84  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45807313 acaaaccttctaatttgtgg-gggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttttacta 45807395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 16 - 76
Target Start/End: Complemental strand, 1243512 - 1243452
Alignment:
Q  16 tgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacat 76  Q
    ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1243512 tgtggtgggtttcaaacctcccttacattgtctctcaactaaaacttgtttcaattaacat 1243452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 18235210 - 18235294
Alignment:
Q  1 acaaaccttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatactat 85  Q
    |||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||    
T  18235210 acaaaccttctaatttgtggggggtttcaaacctctcttacattgtctctcaactaaaacttatttcaattaaaatttgtactat 18235294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 4 - 83
Target Start/End: Original strand, 2045163 - 2045240
Alignment:
Q  4 aaccttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatact 83  Q
    ||||||||||| ||||||||||||||||| || ||||  || ||| | ||||||||||| ||||||||||||||||||||    
T  2045163 aaccttctaatttgtggagggtttcaaacatccctta--ttatctttgaactaaaacttatttcaattaacatttatact 2045240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 2399121 - 2399085
Alignment:
Q  42 attgtctctcaactaaaacttgtttcaattaacattt 78  Q
    ||||||| ||||||||||||||||| |||||||||||    
T  2399121 attgtctgtcaactaaaacttgtttaaattaacattt 2399085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 26149295 - 26149217
Alignment:
Q  5 accttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatact 83  Q
    |||||||||| ||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| ||||    
T  26149295 accttctaatttgtggggggtttcaaacctcccttgcattgtctctcaactaaaacttgtttcaattaacatttgtact 26149217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 6 - 84
Target Start/End: Complemental strand, 11975569 - 11975491
Alignment:
Q  6 ccttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatacta 84  Q
    ||||||||| ||||| ||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||    
T  11975569 ccttctaatttgtggggggtttcaaacctcctttacattgtctctcaactaaaactggtttcaattaacatttatacta 11975491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Original strand, 32151361 - 32151434
Alignment:
Q  5 accttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacattt 78  Q
    |||||||||| ||| | |||||||||||||| ||||| |||||||| |||||||||||||||||||||| ||||    
T  32151361 accttctaatttgtagggggtttcaaacctcccttacgttgtctcttaactaaaacttgtttcaattaatattt 32151434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 50376142 - 50376070
Alignment:
Q  5 accttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacattt 78  Q
    |||||||||| ||||| | |||||||||||| |||| ||||| | |||||| ||| ||||| ||||||||||||    
T  50376142 accttctaatttgtgg-gagtttcaaacctcccttatattgtttgtcaactgaaaattgttccaattaacattt 50376070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 5 - 78
Target Start/End: Complemental strand, 25303748 - 25303675
Alignment:
Q  5 accttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacattt 78  Q
    |||||||||| | | ||||||| ||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  25303748 accttctaatttatagagggttccaaacctctcttacattgtctcttaagtaaaacttatttcaattaacattt 25303675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 22 - 85
Target Start/End: Original strand, 9467863 - 9467926
Alignment:
Q  22 gggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatactat 85  Q
    |||||||||||||| ||||||  ||||||||||||||||||||||||||||| |||| ||||||    
T  9467863 gggtttcaaacctcccttacacggtctctcaactaaaacttgtttcaattaatatttgtactat 9467926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 51 - 84
Target Start/End: Complemental strand, 1538027 - 1537994
Alignment:
Q  51 caactaaaacttgtttcaattaacatttatacta 84  Q
    |||||||||||||| |||||||||||||||||||    
T  1538027 caactaaaacttgtatcaattaacatttatacta 1537994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 85
Target Start/End: Complemental strand, 32993965 - 32993904
Alignment:
Q  22 gggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatactat 85  Q
    |||||||||||||| |||   ||||||||||||||||| |||||||||| ||||||||||||||    
T  32993965 gggtttcaaacctcccttc--ttgtctctcaactaaaatttgtttcaataaacatttatactat 32993904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 3650612 - 3650688
Alignment:
Q  1 acaaaccttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacattt 78  Q
    |||||||||||||| | ||| |||||||||||||| || | ||||| | |||||||||| ||||| ||||||||||||    
T  3650612 acaaaccttctaatttctgg-gggtttcaaacctccctcatattgtttgtcaactaaaaattgttccaattaacattt 3650688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 79
Target Start/End: Complemental strand, 26682951 - 26682878
Alignment:
Q  5 accttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacattta 79  Q
    |||||||||| ||||| ||||||||||||||  ||| ||||| | | |||||||| |||||||||||||||||||    
T  26682951 accttctaatttgtgg-gggtttcaaacctcctttatattgtatgttaactaaaaattgtttcaattaacattta 26682878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 81
Target Start/End: Original strand, 41700905 - 41700981
Alignment:
Q  5 accttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttata 81  Q
    |||||||||| ||||  |||||||||||||| |||| ||||| | |||||| ||| ||||| |||| ||||||||||    
T  41700905 accttctaatttgtgaggggtttcaaacctcccttatattgtttgtcaacttaaaattgttccaatcaacatttata 41700981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 85
Target Start/End: Complemental strand, 36244037 - 36243957
Alignment:
Q  5 accttctaatctgtggagggtttcaaacctctcttacattgtctctcaactaaaacttgtttcaattaacatttatactat 85  Q
    |||||||||| ||||| | |||||||| |||  ||| ||| | | |||||||||| ||||| |||||||||||| ||||||    
T  36244037 accttctaatttgtggggcgtttcaaatctcctttatattttatgtcaactaaaatttgttccaattaacatttttactat 36243957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University