View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2099_high_8 (Length: 215)

Name: NF2099_high_8

Description: NF2099

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2099_high_8

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 207; Significance: 1e-113; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 207; E-Value: 1e-113

Query Start/End: Original strand, 1 - 215

Target Start/End: Complemental strand, 55075408 - 55075194

Alignment:

Q	1	aaccacacaaaattactaatatcaattaaaattccaaacaacagaagactaatctagctggatagagtagaggttagcatcttcatgtgaagagaggata	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55075408	aaccacacaaaattactaatatcaattaaaatttcaaacaacagaagactaatctagctggatagagtagaggttagcatcttcatgtgaagagaggata	55075309	T

Q	101	tcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagaggatttgtggggagagataacatggactttcatgtgccaagtgaaaggtta	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55075308	tcatgatatcacagggccctttatcttacaatgtgttgtcttgatgagatgatttgtggggagagataacatggactttcatgtgccaagtgaaaggtta	55075209	T

Q	201	agtcacaatcaactt	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	55075208	agtcacaatcaactt	55075194	T

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Target: chr3; HSP #2

Raw Score: 41; E-Value: 0.00000000000002

Query Start/End: Original strand, 136 - 215

Target Start/End: Original strand, 50371212 - 50371291

Alignment:

Q	136	ttgtcttgatgagaggatttgtggggagaga-taacatggactttcatgtgccaagtgaaaggttaagtcacaatcaactt	215	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|
T	50371212	ttgtcttgatgagaagaattgtggggagagagtaacatggt-tttcatgtgccaaatgaaaggtaaagtcaccatcaactt	50371291	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]