View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2099_low_1 (Length: 526)

Name: NF2099_low_1
Description: NF2099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2099_low_1
NF2099_low_1
[»] chr3 (16 HSPs)
chr3 (1-246)||(34727764-34728015)
chr3 (1-246)||(34871715-34871966)
chr3 (432-511)||(34728205-34728284)
chr3 (432-511)||(34871446-34871525)
chr3 (285-372)||(34728056-34728144)
chr3 (285-372)||(34871586-34871674)
chr3 (285-348)||(34727589-34727653)
chr3 (285-348)||(34872077-34872141)
chr3 (432-509)||(28684166-28684243)
chr3 (432-503)||(34727740-34727811)
chr3 (432-503)||(34871919-34871990)
chr3 (22-139)||(28683446-28683559)
chr3 (23-145)||(34728251-34728369)
chr3 (23-145)||(34871361-34871479)
chr3 (432-503)||(28683533-28683604)
chr3 (285-320)||(28682792-28682827)
[»] chr1 (1 HSPs)
chr1 (285-321)||(38262926-38262962)
[»] scaffold0167 (1 HSPs)
scaffold0167 (285-336)||(34099-34150)


Alignment Details
Target: chr3 (Bit Score: 148; Significance: 7e-78; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 34727764 - 34728015
Alignment:
Q  1 ggatcattaaatagaagttcagcagattcctatcagaatgtgaaacaaatgattaacactcttgattttggaccaatcatagcatctttgataagagatc 100  Q
    ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||    
T  34727764 ggatcattatatataagatcagcagattcctatcagaatgcgaaacaaatgattaacactcttgattttggtccaatcatagcatctttgatcagagctc 34727863  T
Q  101 aaatatgtgtagctatcaaagacgtggcatcagacccaataacaaatatgaatgatgtataagaaaaaaccctcgagagactgaatgaactcgac----- 195  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||   | |||||||||||||||||||||||||||||||||| ||||||         
T  34727864 aaatatatgtagctatcaaagacgtggcatcagacccaataacaaaaat---taatgtataagaaaaaaccctcgagagactgaatgatctcgaccaaca 34727960  T
Q  196 -caacaaatggt---atcggcagatgagattgttctttggatcggtattactttc 246  Q
     |||||||||||   |||| ||||||||||||||||||||||| ||||| |||||    
T  34727961 acaacaaatggtggcatcgacagatgagattgttctttggatcagtatttctttc 34728015  T

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Target: chr3; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 246
Target Start/End: Complemental strand, 34871966 - 34871715
Alignment:
Q  1 ggatcattaaatagaagttcagcagattcctatcagaatgtgaaacaaatgattaacactcttgattttggaccaatcatagcatctttgataagagatc 100  Q
    ||||||||| ||| ||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||    
T  34871966 ggatcattatatataagatcagcagattcctatcagaatgcgaaacaaatgattaacactcttgattttggtccaatcatagcatctttgatcagagctc 34871867  T
Q  101 aaatatgtgtagctatcaaagacgtggcatcagacccaataacaaatatgaatgatgtataagaaaaaaccctcgagagactgaatgaactcgac----- 195  Q
    |||||| ||||||||||||||||||||||||||||||||||||||| ||   | |||||||||||||||||||||||||||||||||| ||||||         
T  34871866 aaatatatgtagctatcaaagacgtggcatcagacccaataacaaaaat---taatgtataagaaaaaaccctcgagagactgaatgatctcgaccaaca 34871770  T
Q  196 -caacaaatggt---atcggcagatgagattgttctttggatcggtattactttc 246  Q
     |||||||||||   |||| ||||||||||||||||||||||| ||||| |||||    
T  34871769 acaacaaatggtggcatcgacagatgagattgttctttggatcagtatttctttc 34871715  T

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Target: chr3; HSP #3
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 432 - 511
Target Start/End: Original strand, 34728205 - 34728284
Alignment:
Q  432 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaattgacaag 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34728205 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaattgacaag 34728284  T

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Target: chr3; HSP #4
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 432 - 511
Target Start/End: Complemental strand, 34871525 - 34871446
Alignment:
Q  432 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaattgacaag 511  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34871525 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaattgacaag 34871446  T

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Target: chr3; HSP #5
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 285 - 372
Target Start/End: Original strand, 34728056 - 34728144
Alignment:
Q  285 aagcctcagtaccacagccaagaaatttacatcaaagaataaa-ctatccagacggtaattccagatatgttttatcatcacaggcttc 372  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  34728056 aagcctcagtaccacagccaagaaatttacatcaaagaataaatctattcagacggtaattccagatatgttttatcatcataggcttc 34728144  T

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Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 285 - 372
Target Start/End: Complemental strand, 34871674 - 34871586
Alignment:
Q  285 aagcctcagtaccacagccaagaaatttacatcaaagaataaa-ctatccagacggtaattccagatatgttttatcatcacaggcttc 372  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||    
T  34871674 aagcctcagtaccacagccaagaaatttacatcaaagaataaatctattcagacggtaattccagatatgttttatcatcataggcttc 34871586  T

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Target: chr3; HSP #7
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 348
Target Start/End: Original strand, 34727589 - 34727653
Alignment:
Q  285 aagcctcagtaccacagccaagaaatttacatcaaagaataaa-ctatccagacggtaattccag 348  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  34727589 aagcctcagtaccacagccaagaaatttacatcaaagaataaatctattcagacggtaattccag 34727653  T

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Target: chr3; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 285 - 348
Target Start/End: Complemental strand, 34872141 - 34872077
Alignment:
Q  285 aagcctcagtaccacagccaagaaatttacatcaaagaataaa-ctatccagacggtaattccag 348  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  34872141 aagcctcagtaccacagccaagaaatttacatcaaagaataaatctattcagacggtaattccag 34872077  T

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Target: chr3; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 432 - 509
Target Start/End: Complemental strand, 28684243 - 28684166
Alignment:
Q  432 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaattgaca 509  Q
    |||||||||||||||||||||||| |||||| ||||||| ||||| |||||||||||||| ||||||| ||| |||||    
T  28684243 gtaatcgcacaaatcggctctgcataatcatagtatataggatcagcagattcctatcaagatgcgaatcaaatgaca 28684166  T

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Target: chr3; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 503
Target Start/End: Original strand, 34727740 - 34727811
Alignment:
Q  432 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaa 503  Q
    ||||||||||||||||||||||||  |||||  |||||||||||| ||||||||||||| ||||||||||||    
T  34727740 gtaatcgcacaaatcggctctgcaggatcattatatataagatcagcagattcctatcagaatgcgaaacaa 34727811  T

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Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 34871990 - 34871919
Alignment:
Q  432 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaa 503  Q
    ||||||||||||||||||||||||  |||||  |||||||||||| ||||||||||||| ||||||||||||    
T  34871990 gtaatcgcacaaatcggctctgcaggatcattatatataagatcagcagattcctatcagaatgcgaaacaa 34871919  T

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Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 28683559 - 28683446
Alignment:
Q  22 gcagattcctatcagaatgtgaaacaaatgattaacactcttgattttggaccaatcatagcatctttgataagagatcaaatatgtgtagctatcaaag 121  Q
    ||||||||||||||||||| |||||||||||    ||||||||||||||| ||||||||||||||| || | |||| | | |||    |||||| || ||    
T  28683559 gcagattcctatcagaatgcgaaacaaatgaaattcactcttgattttggtccaatcatagcatctatggtcagagctaatata----tagctaccagag 28683464  T
Q  122 acgtggcatcagacccaa 139  Q
    ||||||||||||||||||    
T  28683463 acgtggcatcagacccaa 28683446  T

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Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 145
Target Start/End: Original strand, 34728251 - 34728369
Alignment:
Q  23 cagattcctatcagaatgtgaaacaaatgattaacactcttgattttggaccaatcatagcatctttgataagagatcaaatatgtgtagctatcaaaga 122  Q
    ||||||||||||| |||| ||||||| |||  | ||||||||||||||| |||||||||||||||||| | |||| ||    |||| |||||| || |||    
T  34728251 cagattcctatcaaaatgcgaaacaattgacaagcactcttgattttggtccaatcatagcatctttggtcagagctc----atgtttagctaccataga 34728346  T
Q  123 cgtggcatcagacccaataacaa 145  Q
    ||||||||| |||| ||| ||||    
T  34728347 cgtggcatcggaccaaattacaa 34728369  T

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Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 23 - 145
Target Start/End: Complemental strand, 34871479 - 34871361
Alignment:
Q  23 cagattcctatcagaatgtgaaacaaatgattaacactcttgattttggaccaatcatagcatctttgataagagatcaaatatgtgtagctatcaaaga 122  Q
    ||||||||||||| |||| ||||||| |||  | ||||||||||||||| |||||||||||||||||| | |||| ||    |||| |||||| || |||    
T  34871479 cagattcctatcaaaatgcgaaacaattgacaagcactcttgattttggtccaatcatagcatctttggtcagagctc----atgtttagctaccataga 34871384  T
Q  123 cgtggcatcagacccaataacaa 145  Q
    ||||||||| |||| ||| ||||    
T  34871383 cgtggcatcggaccaaattacaa 34871361  T

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Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 432 - 503
Target Start/End: Complemental strand, 28683604 - 28683533
Alignment:
Q  432 gtaatcgcacaaatcggctctgcaaaatcatcgtatataagatcaacagattcctatcaaaatgcgaaacaa 503  Q
    ||||||||||||||| |||||||| |||||| ||||||| |||   ||||||||||||| ||||||||||||    
T  28683604 gtaatcgcacaaatcagctctgcataatcatagtatataggattggcagattcctatcagaatgcgaaacaa 28683533  T

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Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 320
Target Start/End: Complemental strand, 28682827 - 28682792
Alignment:
Q  285 aagcctcagtaccacagccaagaaatttacatcaaa 320  Q
    ||||||||||||||||||||||||||||||||||||    
T  28682827 aagcctcagtaccacagccaagaaatttacatcaaa 28682792  T

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Target: chr1 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 285 - 321
Target Start/End: Complemental strand, 38262962 - 38262926
Alignment:
Q  285 aagcctcagtaccacagccaagaaatttacatcaaag 321  Q
    |||||||||||||||||||||||||||||||||||||    
T  38262962 aagcctcagtaccacagccaagaaatttacatcaaag 38262926  T

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Target: scaffold0167 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0167
Description:

Target: scaffold0167; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 285 - 336
Target Start/End: Original strand, 34099 - 34150
Alignment:
Q  285 aagcctcagtaccacagccaagaaatttacatcaaagaataaactatccaga 336  Q
    ||||||| ||||||||||||||| |||||||||||||| |||||||| ||||    
T  34099 aagcctcggtaccacagccaagatatttacatcaaagagtaaactattcaga 34150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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