View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2099_low_2 (Length: 374)
Name: NF2099_low_2
Description: NF2099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2099_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 358
Target Start/End: Original strand, 28927635 - 28927993
Alignment:
| Q |
1 |
ttgaaaaagtcaattaaatgaacatgatcacacacacatgtgtcaatgtcgaacactccttccaccacaggtgtcagggctactaacaataaataaatgt |
100 |
Q |
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| T |
28927635 |
ttgaaaaagtcaattaaatgaacatgatctcacacacatgtgtcaatgtcgaatgctccttccatcacaggtgtcagggctactaacaataaataaatgt |
28927734 |
T |
|
| Q |
101 |
tactcaatcaatttcatgtaatgactttggagtatgaacacactgttcatttggggaaaatattagattaaaaattaatttcattgaaaacctaataaac |
200 |
Q |
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| T |
28927735 |
tactcaatcaatttcatgtaatgactttggagtatgaacacactgttcatttggggaaaatattagattaaaaattaatttcattgaaaagctaataaac |
28927834 |
T |
|
| Q |
201 |
tatctatcagtaaataagaaaattttaaaggnnnnnnnngaaaactattgattaa-ttgaaacaaagagagtaaattaaatgggtatcgtaggtgatgat |
299 |
Q |
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| T |
28927835 |
tatctatcagtaaataagaaaattttaaaggaaaaaaaagaaaactattgattaatttgaaacaaagagagtaaattaaatgggtatcgtaggtgatgat |
28927934 |
T |
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| Q |
300 |
ccctaaaaatgtcacaaactcatgcaacaccaaacatcgttttgaagacctgaaaaata |
358 |
Q |
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| T |
28927935 |
ccctaaaaatgtcacaaactcatgcaacaccaaacatcgttttgaagacctgaaaaata |
28927993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 53 - 110
Target Start/End: Original strand, 28904773 - 28904830
Alignment:
| Q |
53 |
acactccttccaccacaggtgtcagggctactaacaataaataaatgttactcaatca |
110 |
Q |
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| T |
28904773 |
acacgccttccatcacaagtgtcagtgctactaacaataaataaatgttactcaatca |
28904830 |
T |
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