View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2099_low_4 (Length: 250)

Name: NF2099_low_4
Description: NF2099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2099_low_4
NF2099_low_4
[»] chr1 (5 HSPs)
chr1 (3-243)||(45806806-45807046)
chr1 (113-168)||(39742566-39742621)
chr1 (117-170)||(25954082-25954135)
chr1 (123-167)||(6092619-6092663)
chr1 (112-168)||(41625527-41625583)
[»] chr2 (2 HSPs)
chr2 (113-164)||(19513993-19514044)
chr2 (124-156)||(32987724-32987756)
[»] chr8 (3 HSPs)
chr8 (103-168)||(37439752-37439817)
chr8 (104-167)||(7664002-7664065)
chr8 (103-168)||(37439619-37439684)
[»] chr6 (2 HSPs)
chr6 (118-159)||(34382901-34382942)
chr6 (127-167)||(23776740-23776780)
[»] chr5 (2 HSPs)
chr5 (112-148)||(8223112-8223148)
chr5 (120-168)||(8624797-8624845)
[»] chr3 (3 HSPs)
chr3 (109-143)||(4224858-4224892)
chr3 (112-165)||(42984315-42984368)
chr3 (100-148)||(3613928-3613976)
[»] scaffold0533 (1 HSPs)
scaffold0533 (120-165)||(10578-10623)
[»] chr4 (1 HSPs)
chr4 (112-168)||(36291813-36291867)


Alignment Details
Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 3 - 243
Target Start/End: Complemental strand, 45807046 - 45806806
Alignment:
Q  3 gccactagtgagagatatatgaagcaaccaagtataactttgagttgaagccaaatttatggtacacaaataagataagtgttacgttatgtataaaatt 102  Q
    |||||| ||| |||||||||||||| ||||| |||| |||||||||||||| ||||||||||||  |||||||||||||| ||||||||||||||| |||    
T  45807046 gccactcgtgtgagatatatgaagctaccaaatatagctttgagttgaagctaaatttatggtaagcaaataagataagtcttacgttatgtataagatt 45806947  T
Q  103 gtttcaactattagatcaataaatctcatcattaaattaaataaaacatgatatgatttattgatcaataatctcttctaatagtgtattttgaaccgag 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  45806946 gtttcaactattagatcaataaatctcatcattaaattaaataaaacatgatgtgatttattgatcaatgatctcttctaatagtgtattttgaaccgag 45806847  T
Q  203 ttacataacnnnnnnnatgtaagaattgtgtatattattcg 243  Q
    |||||||||       ||| |||||||||||||||| ||||    
T  45806846 ttacataactttttttatgcaagaattgtgtatatttttcg 45806806  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 168
Target Start/End: Original strand, 39742566 - 39742621
Alignment:
Q  113 ttagatcaataaatctcatcattaaattaaataaaacatgatatgatttattgatc 168  Q
    ||||||||||||||| || ||||||||||||| ||| |||| |||| |||||||||    
T  39742566 ttagatcaataaatcccaccattaaattaaatgaaatatgacatgacttattgatc 39742621  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 117 - 170
Target Start/End: Original strand, 25954082 - 25954135
Alignment:
Q  117 atcaataaatctcatcattaaattaaataaaacatgatatgatttattgatcaa 170  Q
    ||||||||||||||||| |||||||||  ||| ||||||| |||| ||||||||    
T  25954082 atcaataaatctcatcaataaattaaaagaaatatgatataattttttgatcaa 25954135  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 167
Target Start/End: Complemental strand, 6092663 - 6092619
Alignment:
Q  123 aaatctcatcattaaattaaataaaacatgatatgatttattgat 167  Q
    |||||||||||||||||||||||  | |||||||||| |||||||    
T  6092663 aaatctcatcattaaattaaataggaaatgatatgatctattgat 6092619  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 41625527 - 41625583
Alignment:
Q  112 attagatcaataaatctcatcattaaattaaataaaacatgatatgatttattgatc 168  Q
    ||||||||||||||| |||  |||||||||||||||| |||||  |||| |||||||    
T  41625527 attagatcaataaatttcactattaaattaaataaaatatgatgagattcattgatc 41625583  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 164
Target Start/End: Original strand, 19513993 - 19514044
Alignment:
Q  113 ttagatcaataaatctcatcattaaattaaataaaacatgatatgatttatt 164  Q
    |||||||||||||||||||||||||||||||| ||| || |||||| |||||    
T  19513993 ttagatcaataaatctcatcattaaattaaatgaaatataatatgacttatt 19514044  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 156
Target Start/End: Original strand, 32987724 - 32987756
Alignment:
Q  124 aatctcatcattaaattaaataaaacatgatat 156  Q
    ||||||||||||||||||||||||| |||||||    
T  32987724 aatctcatcattaaattaaataaaatatgatat 32987756  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 37439817 - 37439752
Alignment:
Q  103 gtttcaactattagatcaataaatctcatcattaaattaaataaaacatgatatgatttattgatc 168  Q
    ||||| ||||||| |||||||||| | || |||||||| || |||| |||||||||||||||||||    
T  37439817 gtttctactattaaatcaataaattttataattaaattgaacaaaatatgatatgatttattgatc 37439752  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 167
Target Start/End: Complemental strand, 7664065 - 7664002
Alignment:
Q  104 tttcaactattagatcaataaatctcatcattaaattaaataaaacatgatatgatttattgat 167  Q
    ||||||| |||||||||| |||||||  ||||||||||||| ||| ||||| | ||||||||||    
T  7664065 tttcaaccattagatcaaaaaatctccccattaaattaaatgaaatatgatgtaatttattgat 7664002  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 37439684 - 37439619
Alignment:
Q  103 gtttcaactattagatcaataaatctcatcattaaattaaataaaacatgatatgatttattgatc 168  Q
    ||||| ||||||| |||||||||| | || |||||||| || |||| || ||||||||||||||||    
T  37439684 gtttctactattaaatcaataaattttataattaaattgaacaaaatataatatgatttattgatc 37439619  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 118 - 159
Target Start/End: Original strand, 34382901 - 34382942
Alignment:
Q  118 tcaataaatctcatcattaaattaaataaaacatgatatgat 159  Q
    ||||||||||||||||||||||||||| ||||||||| ||||    
T  34382901 tcaataaatctcatcattaaattaaatgaaacatgatttgat 34382942  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 167
Target Start/End: Original strand, 23776740 - 23776780
Alignment:
Q  127 ctcatcattaaattaaataaaacatgatatgatttattgat 167  Q
    ||||||| |||||||||| ||| ||||||||||||||||||    
T  23776740 ctcatcaataaattaaattaaatatgatatgatttattgat 23776780  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 112 - 148
Target Start/End: Original strand, 8223112 - 8223148
Alignment:
Q  112 attagatcaataaatctcatcattaaattaaataaaa 148  Q
    ||||||||||||||||| |||||||||||||||||||    
T  8223112 attagatcaataaatcttatcattaaattaaataaaa 8223148  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 168
Target Start/End: Complemental strand, 8624845 - 8624797
Alignment:
Q  120 aataaatctcatcattaaattaaataaaacatgatatgatttattgatc 168  Q
    ||||||||||| |||||||||||| |||| ||||||||||||| |||||    
T  8624845 aataaatctcaccattaaattaaagaaaatatgatatgatttactgatc 8624797  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 143
Target Start/End: Original strand, 4224858 - 4224892
Alignment:
Q  109 actattagatcaataaatctcatcattaaattaaa 143  Q
    |||||| ||||||||||||||||||||||||||||    
T  4224858 actattggatcaataaatctcatcattaaattaaa 4224892  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 42984368 - 42984315
Alignment:
Q  112 attagatcaataaatctcatcattaaattaaataaaacatgatatgatttattg 165  Q
    ||||||||||||||| | ||||||||||||||||| | ||||| ||||| ||||    
T  42984368 attagatcaataaattttatcattaaattaaataatatatgatgtgattcattg 42984315  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 148
Target Start/End: Complemental strand, 3613976 - 3613928
Alignment:
Q  100 attgtttcaactattagatcaataaatctcatcattaaattaaataaaa 148  Q
    |||||||  |||||| ||||||||||||||| | |||||||||||||||    
T  3613976 attgtttatactattggatcaataaatctcaccgttaaattaaataaaa 3613928  T

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Target: scaffold0533 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 10578 - 10623
Alignment:
Q  120 aataaatctcatcattaaattaaataaaacatgatatgatttattg 165  Q
    ||||||| ||| ||||||||||||||||||||||| | ||||||||    
T  10578 aataaatttcaccattaaattaaataaaacatgatgtaatttattg 10623  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 36291813 - 36291867
Alignment:
Q  112 attagatcaataaatctcatcattaaattaaataaaacatgatatgatttattgatc 168  Q
    ||||||||||||  ||||||||||||||||||| | | ||||| |||||||||||||    
T  36291813 attagatcaata--tctcatcattaaattaaatgatatatgatgtgatttattgatc 36291867  T

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