View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2099_low_7 (Length: 235)
Name: NF2099_low_7
Description: NF2099
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2099_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 29 - 113
Target Start/End: Complemental strand, 33294414 - 33294330
Alignment:
| Q |
29 |
aagaaactaatatggagtgacatagtaatatagtgctagcagaaccatgaagaaaagattaccatcaagggcttcatctttattc |
113 |
Q |
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| T |
33294414 |
aagaaactaatatagagtgacatattaatatagtgctagcagaaccatgaagaaaagattaccatcaagggcttcatctttattc |
33294330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 182 - 222
Target Start/End: Complemental strand, 33294256 - 33294216
Alignment:
| Q |
182 |
aggataaaattgaaaccgtgtgttgatccatttttcatctc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
33294256 |
aggataaaattgaaaccgtgtgttgatccatttttcatctc |
33294216 |
T |
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