View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_high_3 (Length: 557)
Name: NF21000_high_3
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 183 - 550
Target Start/End: Complemental strand, 50394967 - 50394601
Alignment:
| Q |
183 |
ttataaattaaaacaaagacttgaacttggcattgaccaacgacgtgcatgtaatgtaagtaaaggaacagatctgcattaaactatagtataacaatgg |
282 |
Q |
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| T |
50394967 |
ttataaattaaaacaaagacttgaacttggcattgaccaacgatgtgcatgtcatgtaagtaaaggaacagatctgcattaaactatagtataacaatgc |
50394868 |
T |
|
| Q |
283 |
aatcaaataagaaaatgaaaattatacatcacgggaaagaaaaattagcacacataatgttacatattatactgtataatatgtatgacagcattttaaa |
382 |
Q |
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| T |
50394867 |
aatcaaataaaaaaatgaaaattatacatcacgggaaagaaaaattagcacacataatgttacatattatactgtataatatgtatgacaacattttaaa |
50394768 |
T |
|
| Q |
383 |
tttcatgtttacacttaattatgaatctatgatctataataattaatatcatccttatcaacttgtcttaaaaactaagttgtcaccacatgctgccgtt |
482 |
Q |
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| T |
50394767 |
tttcatgtttacacttaattatgaatctatgatctat-ataattaatatcatccttatccacttgtcttaaaaactaagttgtcaccacatgctgccgtt |
50394669 |
T |
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| Q |
483 |
gaccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctctg |
550 |
Q |
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| T |
50394668 |
gaccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctctg |
50394601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 16 - 183
Target Start/End: Complemental strand, 50399482 - 50399315
Alignment:
| Q |
16 |
atagatgtctttgttttatttgcacaaccaatacattacaattacatgggttctttcaaacatgtttggagcacagcctcaaacaatctcaaacaaatat |
115 |
Q |
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| T |
50399482 |
atagatgtctttgttttatttgcacaaccaatacattacaattacatgggttctttcaaacatgtttggagcacagcctcaaacaatcttaaacaaatat |
50399383 |
T |
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| Q |
116 |
gtcatgttcactgttgcaagcattgaccaaagcttatttttaattaaaagctaaatgaaaatgaatat |
183 |
Q |
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| T |
50399382 |
gtcatgttcactgttgcaagcattgaccaaagcttatttttaattaaaagctaaatgaaaatgaatat |
50399315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 291 - 546
Target Start/End: Complemental strand, 50386428 - 50386186
Alignment:
| Q |
291 |
aagaaaatgaaaattatacatcacgggaaagaaaaattagcacacataatgttacatattatactgtataatatgtatgacagcattttaaatttcatgt |
390 |
Q |
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| T |
50386428 |
aagaaaatgacaagtatacatcactacaaagaaaaacaaacacacataaagctaca-attatactttataatatgtatgacaa-attttaaatttcatgt |
50386331 |
T |
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| Q |
391 |
ttacacttaattatgaatctatgatctataataattaatatcatccttatcaacttgtcttaaaaactaagttgtcaccacatgctgccgttgaccaatt |
490 |
Q |
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| T |
50386330 |
ttacactta--tatga-tctatgatctataata-------tcgtccttaaccatttgtcctaattcc-aagttgtcgcaacatgctgctgttgaccaact |
50386242 |
T |
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| Q |
491 |
ttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttc |
546 |
Q |
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| T |
50386241 |
ttgtcatcttcctctgtcttttctacgttctttacctccaccatttcagcttcttc |
50386186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 485 - 550
Target Start/End: Complemental strand, 50391392 - 50391327
Alignment:
| Q |
485 |
ccaattttgtcatcttcttctgtcttacccacgttctttacctccaccatttcagcttcttctctg |
550 |
Q |
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| T |
50391392 |
ccaactttgtcaccttcttctgtctttcccacgttctttacctccaccatttcagcttcttctctg |
50391327 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 236 - 272
Target Start/End: Complemental strand, 50386756 - 50386720
Alignment:
| Q |
236 |
atgtaagtaaaggaacagatctgcattaaactatagt |
272 |
Q |
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| T |
50386756 |
atgtaagtaaaggagcaaatctgcattaaactatagt |
50386720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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