View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_high_6 (Length: 474)
Name: NF21000_high_6
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 204 - 469
Target Start/End: Complemental strand, 31370307 - 31370039
Alignment:
| Q |
204 |
tttttctaaagaaattgaagaaaccaaaataaatgttttgattttgcttactttgaaggtggagcattatcttggtcatcatttgtggtatgagaagaac |
303 |
Q |
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| T |
31370307 |
tttttctaaagaaattgaagaaaacaaaataaatgttttgattttgcttactttgaaggtggagcattatcttggtcatcatttgtggtatgagaagaac |
31370208 |
T |
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| Q |
304 |
cattagaactattcaatttgctcttgctaatggaatctacatcacttgc---ttctggagaagatctcttgttgtttctaggaacagaaaaattgcatgg |
400 |
Q |
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| T |
31370207 |
cattagaactattcaatttgctcttgctaatggaatctacatcacttgcttcttctggagaagatctcttgttgtttctaagaacagaaaaattgcatgg |
31370108 |
T |
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| Q |
401 |
aagtttttccacttcatcactacctggtaatcccaaccttaattcagtagccttaagattcatctctgt |
469 |
Q |
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| T |
31370107 |
aagtttttccacttcatcactacctggtaatcccaaccttaattctgtagccttaagattcatttctgt |
31370039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 31370446 - 31370373
Alignment:
| Q |
78 |
caggtacatcagtagtatgagttgggacgctgaaggagtttgatctctattgcgaacaaatttctatagcatct |
151 |
Q |
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| T |
31370446 |
caggtacatcagtagtatgagttaggacgctgaaggagtttgatctctattgcgaacaaatttctatagcatct |
31370373 |
T |
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