View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_10 (Length: 325)
Name: NF21000_low_10
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 10 - 313
Target Start/End: Complemental strand, 43065732 - 43065431
Alignment:
| Q |
10 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactnnnnnnnnnncattacgataatataataatggcatggta |
109 |
Q |
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| T |
43065732 |
tatacagaatccaagccaaataattgaataccaaacaaacaagtatgtaataataacaactaaaaaaaa--cattacgataatataataatggcatggta |
43065635 |
T |
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| Q |
110 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcgactattttaaaactagcgattcataaatnnnnnnncgataggattcagaattg |
209 |
Q |
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| T |
43065634 |
atgttaaaatgcaagaatgaagtatatatgagaacacagaaccatcaactattttaaaactagcgattcataaataaaaaaacgataggattcagaattg |
43065535 |
T |
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| Q |
210 |
cgattaaacacgtgcatgaatagaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatga |
309 |
Q |
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|||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43065534 |
cgattaaacatgtgcatgaatcgaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatga |
43065435 |
T |
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| Q |
310 |
tgat |
313 |
Q |
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|||| |
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| T |
43065434 |
tgat |
43065431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 232 - 312
Target Start/End: Original strand, 43047402 - 43047482
Alignment:
| Q |
232 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaatcgatgatga |
312 |
Q |
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| T |
43047402 |
gaaaaacaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaataacctatgaatgaattgattatga |
43047482 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 141
Target Start/End: Original strand, 43047239 - 43047289
Alignment:
| Q |
91 |
atataataatggcatggtaatgttaaaatgcaagaatgaagtatatatgag |
141 |
Q |
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| T |
43047239 |
atataataatggcatggtaatgttaaaatgcatgaatgaagaatgtatgag |
43047289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 289
Target Start/End: Original strand, 42159055 - 42159107
Alignment:
| Q |
237 |
acaaaagcattataatgtaatcaatcgcagatgtaaagtaaacaacacgaata |
289 |
Q |
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||||||||||||| |||||||| ||| |||||||||||||| ||||||||| |
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| T |
42159055 |
acaaaagcattattatgtaatcgatcaaagatgtaaagtaaagtacacgaata |
42159107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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