View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_11 (Length: 299)
Name: NF21000_low_11
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 11 - 284
Target Start/End: Complemental strand, 52026780 - 52026509
Alignment:
| Q |
11 |
ttattcttagtcaaataatgagaaaaagtactatgaaggaaattggaggaagaaagaaaacatatgataagaaagaaatatgtcattttaaaattttatg |
110 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||||||| |||||| |
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| T |
52026780 |
ttattcttagtcaaataatgagaaaaagtactatgaaggaaattggaggaagaaagaaaacat--gacaagaaagaactatgtcattttaaaaatttatg |
52026683 |
T |
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| Q |
111 |
atggatgaatgaggacgaagagcgttgaacataatttaagttgattttgccccgagggttttgtaaggggttgcccctcgcataccaacatgtcagaatg |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
52026682 |
atggatgaatgaggacgaagagcgttgaacataatttaagctgattttgccccgagggttttgcaaggggttgcccctcgcataccaacatgtcagaatg |
52026583 |
T |
|
| Q |
211 |
ttcaattcacagtgaaaagcaatcatatttgtaatgaattggtcgaaacaagtgaggagtttgtttgtgtttgc |
284 |
Q |
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|||||||||||||||||||||| |||||||||||||||||| |||||||| ||||||||| ||| ||||||||| |
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| T |
52026582 |
ttcaattcacagtgaaaagcaagcatatttgtaatgaattgatcgaaacaggtgaggagtgtgtgtgtgtttgc |
52026509 |
T |
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