View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_12 (Length: 293)
Name: NF21000_low_12
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 118 - 283
Target Start/End: Original strand, 7136630 - 7136795
Alignment:
| Q |
118 |
gaattgatagtctaggtggtaattcaatacgtatgtgatgttatatagagttgaatatcaactcaccgccggttgaatatttggtttgactcattttctt |
217 |
Q |
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| T |
7136630 |
gaattgatagtctaggtggtaattcaattcgtatgtgatgttatatagagttgaatatcaactcaccgctggttgactatttggtttgactcattttctt |
7136729 |
T |
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| Q |
218 |
caaatagcaggaacaaaatttgaaatgtttgtgatgttatttcggtaatttgtttttcttttctgt |
283 |
Q |
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| T |
7136730 |
caaatagcaggaacaaaatttgaaatgtttgtgatgttatttcggtaatttgtttttcttttctgt |
7136795 |
T |
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Target: chr5; HSP #2
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 87
Target Start/End: Original strand, 7136513 - 7136599
Alignment:
| Q |
1 |
aggtgtgtaatttttaagatgggcaatttttctttctttatattgatcaaatgttcttgaggtagcatatacaaatgaaatttctgt |
87 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7136513 |
aggtgtgtaatttttaagatgggcaatttttctttctttatattgatcaaatgttcttgaggtagcatataaaaatgaaatttctgt |
7136599 |
T |
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