View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_14 (Length: 262)
Name: NF21000_low_14
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_14 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 9804026 - 9803776
Alignment:
| Q |
1 |
cagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||||||| |
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| T |
9804026 |
cagcaaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaactttatagattttatcg |
9803927 |
T |
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| Q |
101 |
tcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatggaggatgtaacggtgatgtagactctgatttgaataactcgcatga |
200 |
Q |
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| T |
9803926 |
tcgatgattttgatgtatctagttgtcaagtcacctctagcatgtcccaagatggaggatgtaatggtgatgtagactctgatttgaataactcgcatga |
9803827 |
T |
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| Q |
201 |
tttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatga |
251 |
Q |
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| T |
9803826 |
tttacaatatcataatagcaaagattctgattcgtgcaatgtatatgatga |
9803776 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 48 - 234
Target Start/End: Complemental strand, 9828821 - 9828638
Alignment:
| Q |
48 |
atcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcc |
147 |
Q |
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| T |
9828821 |
atcaatagaggacttatcacaaagtgaggaaggaaactcgaaaggttttattgttgatgattttgatgtatctagttgtgaagtcacctctagcaagtca |
9828722 |
T |
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| Q |
148 |
caagatggaggatgtaacggtgatgtagactctgatttgaataactcgcatgatttacaatatcataatagcaaagattctgattcg |
234 |
Q |
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| T |
9828721 |
caagatggaggacataatggtgatgtcgactctgatttgaataacttacaagatttacaagatc---atagcaaggattctgattcg |
9828638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 48 - 197
Target Start/End: Complemental strand, 9755346 - 9755197
Alignment:
| Q |
48 |
atcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcgtcgatgattttgatgtatctagtcgtgaagtcacctctagcatgtcc |
147 |
Q |
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|||||||||||||||||||||||| || ||||||||||||| ||||||||| || |||||||||||| ||||| || |||||||||||||||||| ||| |
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| T |
9755346 |
atcaatagaggacttatcacaaagtgaggaaggaaacttgaaaggttttattgttgatgattttgatttatctggttgtgaagtcacctctagcaagtca |
9755247 |
T |
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| Q |
148 |
caagatggaggatgtaacggtgatgtagactctgatttgaataactcgca |
197 |
Q |
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| T |
9755246 |
caagatggaggacgtaatggtgatgtggactctgatttgaatgactcgca |
9755197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 7353 - 7142
Alignment:
| Q |
4 |
caaagtattccaacaaatgaagaggctcatgataatgattatggatcaatagaggacttatcacaaagcgaagaaggaaacttgagaggttttatcgtcg |
103 |
Q |
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||||||||||||||||||||| | |||| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||| ||||||||| || | |
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| T |
7353 |
caaagtattccaacaaatgaatatgctcgtgataatgatgctggatcaatagaggacttatcacaaagtgaagaaggaaacttgaaaggttttattgttg |
7254 |
T |
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| Q |
104 |
atgattttgatgtatctagtcgtgaagtcacctctagcatgtcccaagatg--gaggatgtaacggtgatgtagactctgatttgaataactcgcatgat |
201 |
Q |
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||||||||||| ||||||| |||||||| ||||||||| ||| ||||| | ||||| ||||||||||||| ||||||||||| ||| ||||||||||| |
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| T |
7253 |
atgattttgatatatctagctgtgaagtcgcctctagcaagtcacaagaaggagaggacgtaacggtgatgtggactctgatttaaatgactcgcatgat |
7154 |
T |
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| Q |
202 |
ttacaatatcat |
213 |
Q |
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|||||| ||||| |
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| T |
7153 |
ttacaagatcat |
7142 |
T |
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