View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_19 (Length: 206)
Name: NF21000_low_19
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 38948196 - 38948039
Alignment:
| Q |
18 |
agatttggtgcatttaatgtgtcaagtagatttgcatctcagctatccgatctcaataaacgtcctagatcattta---gtacatcttattttattctag |
114 |
Q |
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| T |
38948196 |
agatttggtgcatttaatgtgtcaagtagatttgcatctcagctatccgatctcaatgaacgtcctagatcatttactcctacatcttattttattctgg |
38948097 |
T |
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| Q |
115 |
tgtaatatgagtcatccaatctaaaattaacaatgtaaatcatttacaatgtgaaatt |
172 |
Q |
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| T |
38948096 |
tgtaatatgagtcattcgatctaaaattaacaatgtagatcatttacaacgtgaaatt |
38948039 |
T |
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