View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_2 (Length: 720)
Name: NF21000_low_2
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 3e-84; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 489 - 707
Target Start/End: Complemental strand, 13576713 - 13576490
Alignment:
| Q |
489 |
aaaaatcgtaccacaaa-tcagctttaaaattaacatagaatttataaaagaacccaataacattcaagattcatcatcataaaacagccattagattca |
587 |
Q |
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| T |
13576713 |
aaaaattgtaccacaaaatcagctttaaaattaacatagcatttataaaagaacccaataacattcaagattcatcatcataaaaaagccattagattaa |
13576614 |
T |
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| Q |
588 |
atttcttaaca----catagaaaatcagactaaagtcacaaaagatacatcaaacctaaggacataaccctaattatagatccaactaatctcatctaga |
683 |
Q |
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| T |
13576613 |
atttcttaacaaacacattgaaaatcagactaaagtcacaaaagatacatcaaacctaagaacacaaccctaattatagatcctgctaatctcatctaaa |
13576514 |
T |
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| Q |
684 |
ccctaaatctaagccctttcgcct |
707 |
Q |
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| T |
13576513 |
ccctaaatctaagccctttcgcct |
13576490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 16 - 97
Target Start/End: Complemental strand, 13577606 - 13577525
Alignment:
| Q |
16 |
cagaatgtgcaaaccttacttgcataagaaccacggcctctaccataagcgttcttaccatcagcagcattgatagaaatca |
97 |
Q |
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| T |
13577606 |
cagaatgtgcaaagcttacttgcataagtaccacggcctctaccataagctttcttaccatcagcagcattgatagaaatca |
13577525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 158 - 236
Target Start/End: Complemental strand, 13577518 - 13577440
Alignment:
| Q |
158 |
aataggttttgtatagaattgtgcaggaatttcataagaaggatccgagccttaacagtatcaaactcattattcaaac |
236 |
Q |
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| T |
13577518 |
aataggttttgtatagaattgcactggaatttcataagaaggatcttaactttaacagtatcaaactcattattcaaac |
13577440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 364 - 456
Target Start/End: Complemental strand, 13576949 - 13576861
Alignment:
| Q |
364 |
taatttgagaacatgaccaattgaacatcaatatgcatgttggtgtgtgtatatatctacattcaacagttcaaaattggagacaatttaaaa |
456 |
Q |
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| T |
13576949 |
taatttgagaaaatgactaattgaatgtaactatgcatgtttgtgtgtgtat----ctacaatcaacagttcaaaattggagacaattcaaaa |
13576861 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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