View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_4 (Length: 501)
Name: NF21000_low_4
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 71 - 486
Target Start/End: Original strand, 10548823 - 10549240
Alignment:
| Q |
71 |
gagcaacaagcagacaaaagattccaaattttccctttcatatcttatatctgatggaaacacattcacacattcccctatacaattgaagaaaacacaa |
170 |
Q |
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| T |
10548823 |
gagcaacaagtagacaaaagactccaaattttccctttcatatcttatatctgatggaaacacattcacacattcccctatacaattgaagaaaacacaa |
10548922 |
T |
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| Q |
171 |
aaataagtaatcaatgttgatgttaaaacttnnnnnnnnntaatgtagacgacatgtatataaatattttcagttggtgtttctaattaaaagaagcaaa |
270 |
Q |
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| T |
10548923 |
aaataagtaatcaatgttgatgttaaaacttaaaaaaaa-taatgtagacgacatgtatataaatattttcagttggtgtttctaattaaaagaagcaaa |
10549021 |
T |
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| Q |
271 |
aagtgtaaattaccaaaccnnnnnnnn---ggcaataagagttataagatactattactataagaaataatcaagggtaaataaccttctctacgcattg |
367 |
Q |
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| T |
10549022 |
aagagtaaattaccaaaccaaaaaaaaaaaggcaataagagttataagatactattactataagaaataatcaaggataaataaccttctctatgcattg |
10549121 |
T |
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| Q |
368 |
agaatttcattggcttgtatattatatgtatgcaagtccatataaaagaagcagtttgttagcaaagctaacaagagagtatcaaagctagttaattcac |
467 |
Q |
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| T |
10549122 |
agaatttcattggcttgtatattatatgtatgcaagtccatataaaagaagcagtttgttagcaaagctaacaagagagtatcaaagctagttaattcac |
10549221 |
T |
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| Q |
468 |
atgtgaatacaaagtttgt |
486 |
Q |
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| T |
10549222 |
atgtgaatacaaagtttgt |
10549240 |
T |
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