View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21000_low_5 (Length: 491)
Name: NF21000_low_5
Description: NF21000
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21000_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 14 - 475
Target Start/End: Complemental strand, 10917977 - 10917516
Alignment:
| Q |
14 |
agaaaacagtggagagagaatggatttaccattttgcgccgttcggatgtgtgatgaggagtaaaccctagatactggaaatagattgaggcgctctgtg |
113 |
Q |
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| T |
10917977 |
agaaaacagtggagagagaatggatttaccattttgcgccgttcggatgtgtgatgagaagtaaaccctagatactggaaatagattgaggcgctcggtg |
10917878 |
T |
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| Q |
114 |
gatgaagctgaatttctgaaagatttatatatgaagggggtgtgtagcgtgtgagtgtactagcccttggattatgaaagtagtttaatatcagccgtta |
213 |
Q |
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| T |
10917877 |
gatgaagctgaatttctgaaagatttatatatgaagggggtgtgtagcgtgtgagtgtactagcccttggattatgaaagtggattaatatcagccgtta |
10917778 |
T |
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| Q |
214 |
gttttgttcatgtgtacaaagcgcagcgtatgggccctctagggcaatatcccttctttataattactatattgacttttctacccctgtcccacactgt |
313 |
Q |
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| T |
10917777 |
gttttgttcatgtgttcaaagcgcagcgtatgggccctctagggcaacatcccttctttataattactatattgacttttctacccctgtcccacactgt |
10917678 |
T |
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| Q |
314 |
atttgggtggcactcctaattgcaactatgttatatttgtaatttcacatcctcgttataacttgataatttgatagtttactcttgtttcatgtttata |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10917677 |
atttgggtggcactcctaattgcaactatgttatatttgtaatttcacatcctcgttataacttgataatttgatagtttactcgtgtttcatgtttata |
10917578 |
T |
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| Q |
414 |
gcgcaactactcgaacattgttataggcacataggcagaggtaatgcgcacatggaaaaaac |
475 |
Q |
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| T |
10917577 |
gcgcaactactcgaacgttgttattggcacataggcagaggtaatgcgcgcatggaaaaaac |
10917516 |
T |
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