View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21001_low_1 (Length: 582)
Name: NF21001_low_1
Description: NF21001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21001_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 214 - 566
Target Start/End: Original strand, 42759627 - 42759979
Alignment:
| Q |
214 |
cgaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaaca |
313 |
Q |
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| T |
42759627 |
cgaccatcaaattaactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaaca |
42759726 |
T |
|
| Q |
314 |
gtcaggcatgtatatatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttagttttcaa |
413 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |
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| T |
42759727 |
gtcaggcatgtatatatatacagagggaataaagtgcatgattgtgttaatatgcatgggaaaaagaggattacagatggatagatgtgttggttttcaa |
42759826 |
T |
|
| Q |
414 |
aacgaaagttcaatagcccttaattactgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacat |
513 |
Q |
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||||||||||||||| ||||||| || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
42759827 |
aacgaaagttcaataacccttaactaatgttgtgctctattcaagcaaggggaatttcgaaatacaaatacaaactaaatgaaaaactaaaggtttacat |
42759926 |
T |
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| Q |
514 |
aaaacacggtaaactaagcagaccacaataattgcattattttgaattcaaac |
566 |
Q |
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| T |
42759927 |
aaaacaaggtaaactaagcagaccacaataattgcattattttgaattcaaac |
42759979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 15 - 129
Target Start/End: Original strand, 42759433 - 42759548
Alignment:
| Q |
15 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactggatacttaa-ttaaacagaaatagtcttgaacaaaatagatttggcaaacttc |
113 |
Q |
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| T |
42759433 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactagatacttaaattaaacagaaatagtcttgaacaaaatagatttggcaaacttc |
42759532 |
T |
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| Q |
114 |
aacggcaaccttaacg |
129 |
Q |
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||| ||||||||||| |
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| T |
42759533 |
aacaacaaccttaacg |
42759548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 227 - 566
Target Start/End: Complemental strand, 1402208 - 1401869
Alignment:
| Q |
227 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaatgcaaacagtcaggcatgtat |
326 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| | |
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| T |
1402208 |
aactccagcaaatcacagctccatgcacaccaagtttaactgctaagattgaagaaagtttagaaacagatgagtaaaacggaaacagtcaggcatgtgt |
1402109 |
T |
|
| Q |
327 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttagttttcaaaacgaaagttcaa |
426 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
1402108 |
atatatacagagggaataaggtgcatgattgtgttaatatgcatgggaaaaagaggattacatatggatagatgtgttggttttcaaaacgaaagttcaa |
1402009 |
T |
|
| Q |
427 |
tagcccttaattactgttgtgctctattcaagcaaggggaattttgaaatacaaatacaaactaaatgaaaaactaaaggtttacataaaacacggtaaa |
526 |
Q |
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|||||||| |||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
1402008 |
tagcccttgattaatgttgtgttgtattcaagcaaggggaattttgaaatacaaatacaaactaaatggaaaactaaaggtttacataaaacacggtaaa |
1401909 |
T |
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| Q |
527 |
ctaagcagaccacaataattgcattattttgaattcaaac |
566 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
1401908 |
ctaagcagaccacaataattgcattattttgaattcaaac |
1401869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 15 - 116
Target Start/End: Complemental strand, 1402400 - 1402299
Alignment:
| Q |
15 |
cagagaattacttagggaaaaatataaatggaattgaaatgaaactggatacttaattaaacagaaatagtcttgaacaaaatagatttggcaaacttca |
114 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |
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| T |
1402400 |
cagagaattacttagggcaaaatataaatggaattgaaatgaaactggatacttaattaaacagatatagtcttgaacaaaatagatttggcaaatttca |
1402301 |
T |
|
| Q |
115 |
ac |
116 |
Q |
| |
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|| |
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| T |
1402300 |
ac |
1402299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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