View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21001_low_2 (Length: 497)
Name: NF21001_low_2
Description: NF21001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21001_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-122; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 24 - 318
Target Start/End: Complemental strand, 11416328 - 11416034
Alignment:
| Q |
24 |
atcaactcatcccgggttgaatgcctttaatttacaagttgctcaaaggtaacattcacggtatttaaattgaattattgctttttcgattgatgatttt |
123 |
Q |
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| T |
11416328 |
atcaattcatccccggttgaatgcctttaatttacaagttgctcaaaggtaacattcacggtatttaaattgaattattgctttttcgattgatgatttt |
11416229 |
T |
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| Q |
124 |
actgaacaaaatgtccaatcacnnnnnnnntgaaaccagcccttctcagactttagtcaacactttataagaatcttattactatttctgcttcttaatt |
223 |
Q |
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| T |
11416228 |
attgaacaaaatgtccaatcattaaaaaaatgaaaccagcccttctcagactttagtcaacactttataagaatcttattattatttctgcttcttaatt |
11416129 |
T |
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| Q |
224 |
catctccgtacataagttggttccaattctgtaaacaaatcattaatgaaacgaaatttcaacaaacttcttatgttgagcatcttaatgcatta |
318 |
Q |
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| T |
11416128 |
tatctccgtacataagttggttccaattctgtaaacaaatcattaatgaaatgaaatttcaacaaactttctaagttgaccatcttcatgcatta |
11416034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 449 - 486
Target Start/End: Complemental strand, 11415916 - 11415879
Alignment:
| Q |
449 |
tcgtttctctaatatcattttctgttcttctttccttt |
486 |
Q |
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| T |
11415916 |
tcgtttctctaatatcattttctggtcttctttccttt |
11415879 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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