View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21001_low_4 (Length: 364)
Name: NF21001_low_4
Description: NF21001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21001_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 16 - 342
Target Start/End: Complemental strand, 5470260 - 5469934
Alignment:
| Q |
16 |
atgtagtatgtcacctaaccaacatattctcctattcaaacattcctgtcgatgtcccaaaacatgacttaaaactaagtaattatacttgtataaatgt |
115 |
Q |
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| T |
5470260 |
atgtagtatgtcacctaaccaacatattctcctattcaaacattcctgtcgatgtcccaaaaagtgacttaaaactaagtaattatacttgtataaatgt |
5470161 |
T |
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| Q |
116 |
tgttaataaataaataaattgaatatacataatgaggaatggagtaaaccattcagcgctacacgttgttcaaaagttatcaaataaatataacatacac |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5470160 |
tgttaataaataaataaattgaatatacataatgaggaatggagtaaaccattcagcgctacacgttgttcaaaagttatcaaataaatataacatacac |
5470061 |
T |
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| Q |
216 |
tcttggtatcaaatccaatttaccaaatcaaaatgtgagttattcgatcttaatctgatgatccgaattgtgcgactgtgacaaatgtgtgatcatttat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5470060 |
tcttggtatcaaatccaatttaccaaatcaaaatgtgagttattcgatcttaatctgatgatccgaattgtgcgactgtgacaaatgtgtgatcatttat |
5469961 |
T |
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| Q |
316 |
ctgcctacttagcttgtcatgtaaatg |
342 |
Q |
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|| ||||||||| |||||||||||||| |
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| T |
5469960 |
ctacctacttagtttgtcatgtaaatg |
5469934 |
T |
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