View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21001_low_5 (Length: 204)
Name: NF21001_low_5
Description: NF21001
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21001_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 133; Significance: 2e-69; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 39 - 190
Target Start/End: Original strand, 30464197 - 30464349
Alignment:
| Q |
39 |
aaaaggaaggaaatcatcgagtaaatctaagaatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaa |
138 |
Q |
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| T |
30464197 |
aaaaggaaggaaatcatcgagtaaatctaagtatcctcaagggaagagaaaagtcaaggtatacttaaataaggaaactatagagttttattcttgctaa |
30464296 |
T |
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| Q |
139 |
gtgg-tttatctaaatttggtaattaaattcagtgtaactggagttcatcatg |
190 |
Q |
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|||| |||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
30464297 |
gtggttttatctaaatttggtaattaaattcagtgtagctagagttcatcatg |
30464349 |
T |
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