View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21002_high_1 (Length: 519)
Name: NF21002_high_1
Description: NF21002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21002_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 510
Target Start/End: Original strand, 34692559 - 34693057
Alignment:
| Q |
18 |
ctttgtttatgaaggaaatacattaaccttgcctttgctnnnnnnngagtttacgaatagcttttttattgataaacaagatcgttgattaatttattat |
117 |
Q |
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| T |
34692559 |
ctttgtttatgaaggaaatacattaaccttgcctttgctaaaaaaagagtttacgaatagcttttttattgataaacaagatcgttgattaatttattat |
34692658 |
T |
|
| Q |
118 |
ttaagaaagcaaccaagggaaaatgacggccattagatcgatcttggatatgttggcatacttatgggtgatgaaaatgacaaaaatcatgttaaggttg |
217 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34692659 |
ttaagaaagcaaccaagggaaaatgacagccattagatcgatcttggatatgttggcatacttatgggtgatgaaaatgacaaaaatcatgttaaggttg |
34692758 |
T |
|
| Q |
218 |
ctctaacaactatggtgcggtaactagcaatttctcaagtttggtcagatcagcaatgcaaaacatcggc----taaaataaaaactccctgaattaatg |
313 |
Q |
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| T |
34692759 |
ctctaacaactatggtgcggtaactagcaatttctcaagtttggtcagatcagcaatgcaaaacatcggctaaataaaataaaaactccctgaaataata |
34692858 |
T |
|
| Q |
314 |
atacaatttgagttcaaaaagagacaatttgagtaacgtatgaaataaatacaaccctcgagtcaatccaatccaatccaataaaccctaaagaaagaac |
413 |
Q |
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| T |
34692859 |
atacaatttgagttcaaaaagagacaatttgagtaacgtatgaaataaatacaaccctcgagtcaatccaatccaatccaataaaccctaaagaaagaac |
34692958 |
T |
|
| Q |
414 |
tttacatttgtaacctc--caccctccctttttctactcgttcaattacatcatcttccattacagttatttattactacactacctcttctcttctct |
510 |
Q |
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| T |
34692959 |
tttacatttgtaacctccacaccctccctttttctactcgttcaattacatcatcttccattacagttatttactactacactacctcttctcttctct |
34693057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 433 - 479
Target Start/End: Original strand, 34685115 - 34685161
Alignment:
| Q |
433 |
ccctccctttttctactcgttcaattacatcatcttccattacagtt |
479 |
Q |
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| T |
34685115 |
ccctccccttttctactctttcaattacatcatcatccatcacagtt |
34685161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 425 - 480
Target Start/End: Original strand, 8282833 - 8282887
Alignment:
| Q |
425 |
aacctccaccctccctttttctactcgttcaattacatcatcttccattacagtta |
480 |
Q |
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| T |
8282833 |
aacctccaccctccattattc-actcttgcaattacatcatcttccattacagtta |
8282887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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