View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21002_high_4 (Length: 417)
Name: NF21002_high_4
Description: NF21002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21002_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 349; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 5 - 401
Target Start/End: Original strand, 17116722 - 17117119
Alignment:
| Q |
5 |
aaaacgtgaaaacaaggcatgcgtttccacatccaatgaaaaaacacaattgcgtatcacaaccaatcaaaacactccacgtgtcacaacaccacattac |
104 |
Q |
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| T |
17116722 |
aaaacgtgaaaacaaggcatgcgtttccacatccaatgaaaaaacacaattgcgtatcacaaccaatcaaaacactccacgtgtcacaacaccacattac |
17116821 |
T |
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| Q |
105 |
ttaacaacttggcgccttctctacacttccccactttacaccttcacctctccgatcttcacaccgttccggttcacatnnnnnnnccccaaccacccga |
204 |
Q |
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| T |
17116822 |
ttaacaacttggcgccttctctacacttccccactttacaccttcacctctccgatcttcacaccgttccggttcacataaaaaaaccccaaccacctaa |
17116921 |
T |
|
| Q |
205 |
aaaaaccgaaccggtt-attacctcgctctaatggaagctcatggcggaggtctccgccgcatccttgttctcgccttctgcgttgccggaatctggtcg |
303 |
Q |
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|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17116922 |
aaaaaccgaaccggttcatttcctcgctctaatggaagctcatggcggaggtctccgccgcatccttgttctcgccttctgcgttgccggaatctggtcg |
17117021 |
T |
|
| Q |
304 |
gcgtacatttaccaaggcattcttcaggaaacactgtaagattttcatttctttagattgaattgaaaaattgttgtgaattttgaaatgtaagtggt |
401 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17117022 |
gcgtatatttaccaaggcattcttcaggaaacactgtaagattttcatttctttcgattgaattgaaaaattgttgtgaattttgaaatgtaagtggt |
17117119 |
T |
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