View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21002_high_5 (Length: 311)
Name: NF21002_high_5
Description: NF21002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21002_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 290
Target Start/End: Original strand, 32224631 - 32224928
Alignment:
| Q |
1 |
gggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaaggctgctgattttgtg |
100 |
Q |
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| T |
32224631 |
gggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaaggctgctgattttgtg |
32224730 |
T |
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| Q |
101 |
cagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggcttatttaagaaatgaaacatcactgatttca |
200 |
Q |
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| T |
32224731 |
cagtccaaaccagaagagccagccaaacctgaaggtgtgattgctggtgctaaaaatgctgttggaggcttatttaagaaatgaaacatcactgatttca |
32224830 |
T |
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| Q |
201 |
ctttagcatcttgtg--------attaattaattaataaggatactaaacttgtcatccattcaagtatgtgtataagttagcactgtgtatcttatc |
290 |
Q |
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| T |
32224831 |
ctttagcatcctgtgattaattaattaattaattaataaggatactaaacttgtcatcccttcaagtatgtgtataagttagcactgtgtatcttatc |
32224928 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 2 - 91
Target Start/End: Original strand, 32229491 - 32229580
Alignment:
| Q |
2 |
ggaaatgctgcagctggtgtccagacaactgtgggaaatgctgcagctaatgttcagaagaccgtaggagaatatgctaccaaggctgct |
91 |
Q |
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| T |
32229491 |
ggaaatgctgcttctggtgcccagaaaactttgggaaatgctgcagctggagttcataagactgtaggagattatgctaccacggctgct |
32229580 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 220 - 290
Target Start/End: Original strand, 32229703 - 32229777
Alignment:
| Q |
220 |
attaattaataaggatactaaacttgtcatccattcaa---gtat-gtgtataagttagcactgtgtatcttatc |
290 |
Q |
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| T |
32229703 |
attaattaataaggacactaaacttgccatcccttttaagagtattgtgtataagttagcactgtgtatcttatc |
32229777 |
T |
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