View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21002_low_2 (Length: 495)
Name: NF21002_low_2
Description: NF21002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21002_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 19 - 472
Target Start/End: Complemental strand, 26134783 - 26134336
Alignment:
| Q |
19 |
ataaggtgttgattaattaatgatgtgtgttattattggttacagcttaattggcatcgattttattggattaatgtagtatctaaattatatgaattgt |
118 |
Q |
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| T |
26134783 |
ataaggtgttgattaattaatgatgtgtgttatt---ggttacagcttaattggcatcgatgtaattggattaatgtagtatctaaattatatgaattgt |
26134687 |
T |
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| Q |
119 |
tgctggtgttggagggagcaaattctgctgcttgttttatttagcttcattaatggattgttgctggaatctagccctctaccctgttgttgattaaata |
218 |
Q |
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| T |
26134686 |
tgctggtgttggagggagcaaattctgctgcttgtttt-tttagctttattaatggattgttgctggaatctagccctctaccctgttgttgattaaata |
26134588 |
T |
|
| Q |
219 |
agtggttgtatagaaacgagagaatgattagttaaactatatgctaaactttcaactacaaattacaattcatcatccaaccagtatttctattttctaa |
318 |
Q |
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| T |
26134587 |
agtggttgtatataaacgagagaatgattagttaaactatatgctaaactttcaactacaaattacaattcatcatccaaccagtatttctattttctaa |
26134488 |
T |
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| Q |
319 |
ttggatagatattggcataacaagaacaattatcatatacaataatagtgtaatttaagttaatatatagttattt--tnnnnnnnnttaagataatata |
416 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
26134487 |
ttggatagatattggcataacaagaacaattatc--atacaatcatagtgtaatttaagttaatatatagttatttaaaaaaaaaaattaagata--ata |
26134392 |
T |
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| Q |
417 |
tatagtaaacaaactataagtgataagttgatttgaaagatttacgaggaaaatat |
472 |
Q |
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| T |
26134391 |
tatagtaaacaaactataagtgataagttggtttgaaagatttatgaggaaaatat |
26134336 |
T |
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