View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21002_low_3 (Length: 495)
Name: NF21002_low_3
Description: NF21002
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21002_low_3 |
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| [»] scaffold0026 (4 HSPs) |
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Alignment Details
Target: scaffold0026 (Bit Score: 326; Significance: 0; HSPs: 4)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 101 - 478
Target Start/End: Original strand, 100039 - 100423
Alignment:
| Q |
101 |
taacacataacatggaagagaacaagaaaactatggagaaaagtgttggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
100039 |
taacacataacatggaagagaacaagaaaactatggagaaaagtgttggtttcacagaagagcaagatgctctagtggtaaaatcatggaatgcaatgaa |
100138 |
T |
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| Q |
201 |
gaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatttcatttcagtaattaatccatttttcaactcttctgttaattatattaatt |
300 |
Q |
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| T |
100139 |
gaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatttcatttcagtaattaatccatttttcaactcttctgttaattatattaatt |
100238 |
T |
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| Q |
301 |
aattttcagctggtaagttaactagacatgtttttgaccaattgagta---tcactcatgattga----attctgacttgttagaatactggagattgct |
393 |
Q |
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| T |
100239 |
aattttcagctggtaagttaactagacatgtttttgaccaattgagtagtatcactcgtgatttatttaattctgacttgttagaatactggagattgct |
100338 |
T |
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| Q |
394 |
ccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagccacatgcaatgt |
478 |
Q |
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| T |
100339 |
ccaccagctaaacaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagccacatgctatgt |
100423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 99504 - 99598
Alignment:
| Q |
15 |
gtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccacaatttaataaacaaatattacactaccttataacacata |
109 |
Q |
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| T |
99504 |
gtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccacaatttaataaacaaatattacactaccttataacacata |
99598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 367 - 478
Target Start/End: Original strand, 102389 - 102500
Alignment:
| Q |
367 |
tgacttgttagaatactggagattgctccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagc |
466 |
Q |
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| T |
102389 |
tgacatgttagaatttttgagattgctccaccagctaagcaactattctcattcttaagagattcaaatgttcctttggagcaaaatcctaagctcaagc |
102488 |
T |
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| Q |
467 |
cacatgcaatgt |
478 |
Q |
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| T |
102489 |
ctcatgccatgt |
102500 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #4
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 163 - 249
Target Start/End: Original strand, 102195 - 102281
Alignment:
| Q |
163 |
caagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatt |
249 |
Q |
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| T |
102195 |
caagaagctctagtggtgaagtcatggaatgcaatcaagaacaactcagaagatctgagtctcaagtttttcaagaggtaagtcatt |
102281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 15 - 478
Target Start/End: Complemental strand, 25850240 - 25849764
Alignment:
| Q |
15 |
gtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccacaatttaataaacaaatattacactaccttataacacataacatg |
114 |
Q |
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| T |
25850240 |
gtaacaaagcaaactacaacatcaactatttcatcatcctttgccactaccaccacaatttaataaataaatattatactctcttataacacataacatg |
25850141 |
T |
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| Q |
115 |
gaagagaacaagaaaactatggagaaaagtgttggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctgggg |
214 |
Q |
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|||||||||||||||||| |||| |||||||| ||| ||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||| | | |
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| T |
25850140 |
gaagagaacaagaaaactgtggatggaagtgttgatttcacagaagagcaagaagctctagtggtaaagtcatggaacgcaatgaagaataattcttgtg |
25850041 |
T |
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| Q |
215 |
acctgagtctcaagtttttcaagaagtaaggcatttcatttcagtaattaa-tccatttttcaactcttctgttaattatattaattaattttcagctgg |
313 |
Q |
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||||||||||||||||||||| |||||||| ||||||||||| ||||||| | |||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25850040 |
acctgagtctcaagtttttcacgaagtaagacatttcatttccttaattaattaaatttatcaactcttctgttaattatattaattaattttcagctgg |
25849941 |
T |
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| Q |
314 |
taagttaactagacatgtttttgaccaattg--------agtatcactcatg----attgaattctgacttgttagaatactggagattgctccaccagc |
401 |
Q |
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||||||||||||||||||||||||||||||| |||||||||| || ||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25849940 |
taagttaactagacatgtttttgaccaattgagtagtatagtatcactcgtgatttatttaattctgacttgttagaatactggagattgctccaccagc |
25849841 |
T |
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| Q |
402 |
caagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagccacatgcaatgt |
478 |
Q |
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| T |
25849840 |
taagcaaatgttttcattcttaaaagattcaaatgttcctttggagcaaaatcctaagcttaagcctcatgctatgt |
25849764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 367 - 478
Target Start/End: Complemental strand, 25847898 - 25847787
Alignment:
| Q |
367 |
tgacttgttagaatactggagattgctccaccagccaagcaaatgttttcattcttaaaagattcaaatgtccctttggaacataatcctaagctcaagc |
466 |
Q |
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|||| ||||||||| || ||||||||||||||||| |||||| |||| ||||||||||||||||||||||| || ||||| || |||||||||||||||| |
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| T |
25847898 |
tgacatgttagaatccttgagattgctccaccagctaagcaattgttctcattcttaaaagattcaaatgttccattggagcacaatcctaagctcaagc |
25847799 |
T |
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| Q |
467 |
cacatgcaatgt |
478 |
Q |
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| T |
25847798 |
ctcatgccatgt |
25847787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 163 - 249
Target Start/End: Complemental strand, 25848104 - 25848018
Alignment:
| Q |
163 |
caagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctggggacctgagtctcaagtttttcaagaagtaaggcatt |
249 |
Q |
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||||||||||||||||| || |||||||||||||| ||| | || ||||| || |||||||||||||||||||||||||||| |||| |
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| T |
25848104 |
caagaagctctagtggtgaagtcatggaatgcaatcaagtacaactctggagatctgagtctcaagtttttcaagaagtaagtcatt |
25848018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 148 - 211
Target Start/End: Complemental strand, 25845847 - 25845784
Alignment:
| Q |
148 |
ggtttgacagaagagcaagaagctctagtggtaaaatcatggaatgcaatgaagaaaaattctg |
211 |
Q |
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| T |
25845847 |
ggtttcactgaagaacaagaagctcttgtggtgaagtcatggaatgcaatgaagaagaattctg |
25845784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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