View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21003_high_2 (Length: 502)
Name: NF21003_high_2
Description: NF21003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21003_high_2 |
 | |
|
| [»] scaffold1360 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 471; Significance: 0; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Complemental strand, 4010411 - 4009917
Alignment:
| Q |
1 |
tggttatggttgaccaaattatttatccacccctattcataggccgttaatattcatatatctttttcttttgttgtatagaaatgatgctgagctactc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010411 |
tggttatggttgaccaaattatttatccacccctattcataggccgttaatattcatatatctttttcttttgttgtatagaaatgatgctgagctactc |
4010312 |
T |
|
| Q |
101 |
gaagaaatcatcaatctagtgttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcat |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010311 |
gaagaaatcatcaatctattgttgaagaggttgagtaagcacccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttgaattcat |
4010212 |
T |
|
| Q |
201 |
tgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattg |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
4010211 |
tgttacaaaaagagtcagaaaaggtcagtgtcattggaatttggggcatgggaagtattggcaagacaactattgcaggagaaatttttaaccaaaattg |
4010112 |
T |
|
| Q |
301 |
ctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactatta |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010111 |
ctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacatggaagaacatttttgaaagaaaaacttttttctacactatta |
4010012 |
T |
|
| Q |
401 |
gcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
495 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4010011 |
gcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
4009917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 36 - 495
Target Start/End: Complemental strand, 4002679 - 4002220
Alignment:
| Q |
36 |
ttcataggccgttaatattcatatatctttttcttttgttgtatagaaatgatgctgagctactcgaagaaatcatcaatctagtgttgaagaggttgag |
135 |
Q |
| |
|
||||| |||| |||||||||||||| |||| ||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4002679 |
ttcattggccattaatattcatatacctttctcttttgttgtataggaatgatgctgagctacttgaagaaatcatcaatcttgtgttgaagaggttgag |
4002580 |
T |
|
| Q |
136 |
taagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcatt |
235 |
Q |
| |
|
||||||||| |||| ||||||||||| ||||||||| |||| || |||||||||| | |||||||||| || ||| ||||||||||||||||||| |
|
|
| T |
4002579 |
taagcaccctattaatacaaaaggacttattggaattggcaaaccagttgcacatttagaatcattgttacgtcaacagttagaaaaggtccgtgtcatt |
4002480 |
T |
|
| Q |
236 |
ggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaagg |
335 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||| | |||| |||||||| || |||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
4002479 |
ggaatttggggtatgggaggtattggcaagacaactattgctgaagaagtttttaaccgaagttgctctgaatatgaaggtttttgttttttggaaaagg |
4002380 |
T |
|
| Q |
336 |
taagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggtt |
435 |
Q |
| |
|
|||| || ||| |||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| ||| ||||||||| | |
|
|
| T |
4002379 |
taagtgaagaatcaggaaggcatggaataacatttttaaaagaaaagcttttttctacactattagcagaagatgtgaaaattaattcaccaaatgggct |
4002280 |
T |
|
| Q |
436 |
gtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
495 |
Q |
| |
|
||||||||||| | ||| | |||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
4002279 |
gtctaattatattcagaggatgattggccgtatgaaggttcttattgttcttgatgatgt |
4002220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 59 - 492
Target Start/End: Complemental strand, 4025583 - 4025150
Alignment:
| Q |
59 |
tatctttttcttttgttgtatagaaatgatgctgagctactcgaagaaatcatcaatctagtgttgaagaggttgagtaagcacccagttaactcaaaag |
158 |
Q |
| |
|
||||||| ||||||||||||||| ||||| || || ||||| ||||||||||||||||| ||| |||| |||||||| |||||||| ||||| |||||| |
|
|
| T |
4025583 |
tatctttatcttttgttgtataggaatgacgccgaactacttgaagaaatcatcaatcttgtgatgaaaaggttgagcaagcaccctattaacacaaaag |
4025484 |
T |
|
| Q |
159 |
gacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtat |
258 |
Q |
| |
|
||||| ||||||||| |||| |||| || ||||| | || ||||||| |||||||||||||||| ||||| |||||||||||||| ||||||||||| |
|
|
| T |
4025483 |
gacttattggaattggcaaaccaatggctcatttagaatcgttgttacgtcaagagtcagaaaaggttcgtgttattggaatttggggtatgggaggtat |
4025384 |
T |
|
| Q |
259 |
tggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaattaggaagacat |
358 |
Q |
| |
|
|||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||| || |||||||||||||| |
|
|
| T |
4025383 |
tggcaagacaactattgccgaagaaatttttaaacaaaattgctctgaatatgaaggttgttgttttttggcaaaggtaagtgaagaattaggaagacat |
4025284 |
T |
|
| Q |
359 |
ggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactgtgagaagga |
458 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||| |||||||||||||||| ||||| || |||||||| |
|
|
| T |
4025283 |
ggaataacatttttgaaagaaaaacttttttctagactattagcagaagatgtgaaaatcgattcaccaaatgggttgtctagttatattgagagaagga |
4025184 |
T |
|
| Q |
459 |
ttggtcgtatgaaggttcttattgttcttgatga |
492 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||| |
|
|
| T |
4025183 |
ttggccgtatgaaggtccttattgttcttgatga |
4025150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 40 - 495
Target Start/End: Original strand, 3954172 - 3954610
Alignment:
| Q |
40 |
taggccgttaatattcatatatctttttcttttgttgtatagaaatgatgctgagctactcgaagaaatcatcaatctagtgttgaagaggttgagtaag |
139 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||||||||||||||| ||||||| |||| |||| ||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3954172 |
taggccattaatattcatatgtctttctcttttgttgtataggaatgatgttgagatacttgaagaaatcatcaatcttgtgttgaagaggttgagtaag |
3954271 |
T |
|
| Q |
140 |
cacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaa |
239 |
Q |
| |
|
| || ||||| || ||||| | ||||||||| |||| || ||| |||||| | |||||||||| || ||||||||||||| |||||||||||| |
|
|
| T |
3954272 |
tatcctattaacacagaaggatatattggaattgccaaaccagttggacatttagaatcattgttacgtcaaaagtcagaaaaggtttgtgtcattggaa |
3954371 |
T |
|
| Q |
240 |
tttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaag |
339 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| | |||| ||| |||| || |||||||||||||||||||||||||||||||| |||||| || |
|
|
| T |
3954372 |
tttggggtatgggaggtattggcaagacaactattgctgaagaagtttataaccgaagttgctctgaatatgaaggttgttgttttttggcaaaggtgag |
3954471 |
T |
|
| Q |
340 |
cgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtct |
439 |
Q |
| |
|
|| |||||||||| || | ||| | |||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| |
|
|
| T |
3954472 |
tgacgaattaggaaggcacg-----------------gaacagcttttttcaacactattagcagaagatgtgaaaatcgattcaccaaatgggttgtct |
3954554 |
T |
|
| Q |
440 |
aattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
495 |
Q |
| |
|
||| ||| | |||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3954555 |
aataatattcagagaaggattggccgtatgaaggttcttattgttcttgatgatgt |
3954610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 121 - 495
Target Start/End: Complemental strand, 3987290 - 3986916
Alignment:
| Q |
121 |
gttgaagaggttgagtaagcacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaa |
220 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| | ||||||||| || |
|
|
| T |
3987290 |
gttgaagatgttgagtaagcacccagttaactcaaaaggacttattggaattgacaaatcaattgcacatttaaattcattgttaaagaaagagtcacaa |
3987191 |
T |
|
| Q |
221 |
aaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgtt |
320 |
Q |
| |
|
||||||||||| |||||||||||||| ||| || |||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||||| |
|
|
| T |
3987190 |
aaggtccgtgtgattggaatttggggtatgcctggcattggcaagacaactattgcagaagaaatttttaaccaaaatcgctctgaatatgatggttgtt |
3987091 |
T |
|
| Q |
321 |
gttttttggaaaaggtaagcgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccg |
420 |
Q |
| |
|
||||||||| |||||| || || | ||| | |||||||||| || ||| ||||||| |||||| ||| | |||| || |||||||||||||| |
|
|
| T |
3987090 |
gttttttggcaaaggtgagtgaaaagttaaaattacatggaatagaatctttaaaagaaaccctttttactaaaatattggccgaagatgtgaaaattga |
3986991 |
T |
|
| Q |
421 |
ttcgccaaatgggttgtctaattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
495 |
Q |
| |
|
| | |||||| ||||||| | | ||| || |||| | ||||| || |||||||||||||| ||||||||||||| |
|
|
| T |
3986990 |
tacaccaaataggttgtccagtgatattgagagacgaattggacgcatgaaggttcttatcattcttgatgatgt |
3986916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 150 - 493
Target Start/End: Complemental strand, 3801852 - 3801509
Alignment:
| Q |
150 |
actcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcat |
249 |
Q |
| |
|
||||| |||||||| ||||||| |||| | |||||||||||||||||||||||||| | |||||||| | |||||||||||| |||||||||||||| || |
|
|
| T |
3801852 |
actcagaaggacttattggaatggacagaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat |
3801753 |
T |
|
| Q |
250 |
gggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaatta |
349 |
Q |
| |
|
||| ||||||||||||||||||||||||| |||||| |||||| ||||| ||| ||||||||| |||||||||||| || ||| || || | ||||| |
|
|
| T |
3801752 |
gggcggtattggcaagacaactattgcagaagaaatatttaaccaaaatcgctttgaatatgatggttgttgttttatgtcaaatgtgagtttggaatta |
3801653 |
T |
|
| Q |
350 |
ggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactg |
449 |
Q |
| |
|
||||| | |||||||||| ||| |||||||| |||||||||| |||||| ||||||||||||||| ||| |||||||||||||||||| ||| | |
|
|
| T |
3801652 |
ggaaggcgtggaataacaatttaaaaagaaaagcttttttctaacctattaaatgaagatgtgaaaatcgattcaccaaatgggttgtctaataatattc |
3801553 |
T |
|
| Q |
450 |
tgagaaggattggtcgtatgaaggttcttattgttcttgatgat |
493 |
Q |
| |
|
||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3801552 |
atagaaggattggccgtatgaaggttcttattgatcttgatgat |
3801509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 150 - 493
Target Start/End: Complemental strand, 4218909 - 4218566
Alignment:
| Q |
150 |
actcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcat |
249 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||||||||||||||||||||| | |||||||| | |||||||||||| |||||||||||||| || |
|
|
| T |
4218909 |
actcaaaaggacttattggaatggacaaaccaattgcacatttgaattcattgttaaacaaagagtcgggaaaggtccgtgttattggaatttggggtat |
4218810 |
T |
|
| Q |
250 |
gggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcgagcaatta |
349 |
Q |
| |
|
||| |||||||||||||||||||||||| |||| | ||| || ||| ||| ||||||||||| |||||||||||| || ||| || || | |||| |
|
|
| T |
4218809 |
gggcggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgttttatgtcaaatgtgagtttgggatta |
4218710 |
T |
|
| Q |
350 |
ggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaattatactg |
449 |
Q |
| |
|
||| | ||||||||||||||| ||||||| |||||||||| |||||| ||||||||||||||| ||| ||||||||||||||||| ||| | |
|
|
| T |
4218709 |
caaagtcgtggaataacatttttaaaagaaatgcttttttctaacctattaaatgaagatgtgaaaatcgattcatcaaatgggttgtctaataatattc |
4218610 |
T |
|
| Q |
450 |
tgagaaggattggtcgtatgaaggttcttattgttcttgatgat |
493 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
4218609 |
atagaaggattgaccgtatgaaggttcttattgttcttgatgat |
4218566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 143 - 492
Target Start/End: Complemental strand, 3810289 - 3809940
Alignment:
| Q |
143 |
ccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaattt |
242 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||| ||| |||||||||| ||||||||| | ||||||||| |||||| || ||| || ||||||| |
|
|
| T |
3810289 |
ccagttaaatcaaaagaacttgttggaattgacaaatctatttcacatttgaaatcattgttaaagaaagagtcacaaaaggcccctgttatcggaattt |
3810190 |
T |
|
| Q |
243 |
ggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaagcga |
342 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||| |||| | ||| || ||| ||| ||||||||||| ||||||||||| |||||||||||||| || |
|
|
| T |
3810189 |
ggggtatgggtggtattggcaagacaactattgcaaaagaattatttgaccaaatttgttctgaatatgatggttgttgtttcttggaaaaggtaagtga |
3810090 |
T |
|
| Q |
343 |
gcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtctaat |
442 |
Q |
| |
|
| ||| |||||||||||| | ||| ||| | ||||||||||||| |||||| ||||||||||||||||| | | |||||| ||||| ||| | |
|
|
| T |
3810089 |
agagttaacaagacatggaatggattctttaaaaaataaacttttttctaaactattggcagaagatgtgaaaattgatacaccaaattggttgcctagt |
3809990 |
T |
|
| Q |
443 |
tatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatga |
492 |
Q |
| |
|
||| || ||| ||||||| || |||||||||||||| ||||||||||| |
|
|
| T |
3809989 |
gatattgagaggcggattggccgcatgaaggttcttatcgttcttgatga |
3809940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 146 - 336
Target Start/End: Complemental strand, 3817854 - 3817664
Alignment:
| Q |
146 |
gttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggg |
245 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| ||||||| ||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
3817854 |
gttaactcaaaagaacttgttggaattgacaaaccaattgcggatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg |
3817755 |
T |
|
| Q |
246 |
gcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggt |
336 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||| | ||||| | || || ||||| ||||||||||| ||||||||||| |
|
|
| T |
3817754 |
gcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt |
3817664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 146 - 336
Target Start/End: Original strand, 3932834 - 3933024
Alignment:
| Q |
146 |
gttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggg |
245 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
3932834 |
gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg |
3932933 |
T |
|
| Q |
246 |
gcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggt |
336 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| |||||| |||| | ||||| | || || ||||| ||||||||||| ||||||||||| |
|
|
| T |
3932934 |
gcatgggcggtattggcaagacaactattgcagaagaaatatttagccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt |
3933024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 190 - 336
Target Start/End: Original strand, 3919654 - 3919800
Alignment:
| Q |
190 |
tttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgggaggtattggcaagacaactattgcaggagaaattttt |
289 |
Q |
| |
|
|||||||||||||||| | |||||||||||| |||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||| ||| |
|
|
| T |
3919654 |
tttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggggcatgggcggtattggcaagacaactattgcagaagaaatattt |
3919753 |
T |
|
| Q |
290 |
aactaaaattgctctgaatatgaaggttgttgttttttggaaaaggt |
336 |
Q |
| |
|
| | ||||| | || || ||||| ||||||||||| ||||||||||| |
|
|
| T |
3919754 |
agccaaaatcgttccgattatgatggttgttgtttcttggaaaaggt |
3919800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 283
Target Start/End: Original strand, 3963129 - 3963267
Alignment:
| Q |
145 |
agttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttgg |
244 |
Q |
| |
|
||||| |||||||||||| ||||||||| ||| || ||||||| | || ||||| ||| ||||||||||| | || ||||| |||| |||||| |
|
|
| T |
3963129 |
agttagctcaaaaggactcattggaattggaaaacaaactgcacatctaaagtcattattaagccaagagtcagaagatgttcgtgttgttgggatttgg |
3963228 |
T |
|
| Q |
245 |
ggcatgggaggtattggcaagacaactattgcaggagaa |
283 |
Q |
| |
|
|| ||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
3963229 |
ggtatgggtggtattggcaagacaacccttgcagaagaa |
3963267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 40 - 495
Target Start/End: Complemental strand, 13398326 - 13397871
Alignment:
| Q |
40 |
taggccgttaatattcatatatctttttcttttgttgtatagaaatgatgctgagctactcgaagaaatcatcaatctagtgttgaagaggttgagtaag |
139 |
Q |
| |
|
|||||| |||||||||||| || ||| |||||||||| |||| ||||||||||||||||| |||||||||||||| || |||||||||||||||| |||| |
|
|
| T |
13398326 |
taggccattaatattcatacatttttatcttttgttgcataggaatgatgctgagctacttgaagaaatcatcaagcttgtgttgaagaggttgaataag |
13398227 |
T |
|
| Q |
140 |
cacccagttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaa |
239 |
Q |
| |
|
||||| ||||| ||||||||||| |||||||||| ||| ||||||||||||| | |||||||||| |||||||||||||||| || || ||||| | |
|
|
| T |
13398226 |
caccctgttaaaacaaaaggacttattggaattgagaaagcaattgcacatttagaaccattgttacatcaagagtcagaaaaggttcgcgtaattggta |
13398127 |
T |
|
| Q |
240 |
tttggggcatgggaggtattggcaagacaactattgcaggagaaatttttaactaaaattgctctgaatatgaaggttgttgttttttggaaaaggtaag |
339 |
Q |
| |
|
||||||| |||||||||||||| |||||||||||||| | |||||||||||| ||| ||| |||||||||||||| ||||||||||||| |||||| || |
|
|
| T |
13398126 |
tttggggtatgggaggtattggaaagacaactattgccgaagaaatttttaatcaaatttgttctgaatatgaaggatgttgttttttggcaaaggtgag |
13398027 |
T |
|
| Q |
340 |
cgagcaattaggaagacatggaataacatttttgaaagaaaaacttttttctacactattagcagaagatgtgaaaatccgttcgccaaatgggttgtct |
439 |
Q |
| |
|
|| |||||||||| ||||||||| | ||||| |||||||| ||| ||||||||||||||||||||||||| |||||| ||| ||||||||||| || |
|
|
| T |
13398026 |
tgaagaattaggaaggcatggaatagcgtttttaaaagaaaagcttgtttctacactattagcagaagatgtaaaaatcgattcatcaaatgggttgcct |
13397927 |
T |
|
| Q |
440 |
aattatactgtgagaaggattggtcgtatgaaggttcttattgttcttgatgatgt |
495 |
Q |
| |
|
| ||||| | |||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
13397926 |
agttatattcagagaaggattggccatatgaaggttcttattgttcttgatgatgt |
13397871 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1360 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: scaffold1360
Description:
Target: scaffold1360; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 146 - 284
Target Start/End: Original strand, 1829 - 1967
Alignment:
| Q |
146 |
gttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggg |
245 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| |||||||| ||||||||||||||||| | |||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
1829 |
gttaaatcaaaaagacttgttggaattgacaaaccaattgcagatttgaattcattgttaaagaaagagtcagaacaggtccgtgttattggaatttggg |
1928 |
T |
|
| Q |
246 |
gcatgggaggtattggcaagacaactattgcaggagaaa |
284 |
Q |
| |
|
||||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
1929 |
gcatgggcggtattggcaagacaactattgcagaagaaa |
1967 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 152 - 283
Target Start/End: Complemental strand, 7069266 - 7069135
Alignment:
| Q |
152 |
tcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttggggcatgg |
251 |
Q |
| |
|
|||||||||||| ||||||||| |||| |||| ||| | | | |||||||||||| |||||| || | || |||| |||||||||||||| ||| |
|
|
| T |
7069266 |
tcaaaaggacttattggaattggcaaacaaatttcacgtgtagaatcattgttacaagtagagtcgcaagatgttcgtgctattggaatttggggtatga |
7069167 |
T |
|
| Q |
252 |
gaggtattggcaagacaactattgcaggagaa |
283 |
Q |
| |
|
| |||||||| |||||||||||||||| |||| |
|
|
| T |
7069166 |
gtggtattggaaagacaactattgcagaagaa |
7069135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 455 - 496
Target Start/End: Complemental strand, 7092901 - 7092860
Alignment:
| Q |
455 |
aggattggtcgtatgaaggttcttattgttcttgatgatgtc |
496 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |||||| |
|
|
| T |
7092901 |
aggattcgtcgtatgaaggttcttattgttcttgacgatgtc |
7092860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 145 - 246
Target Start/End: Complemental strand, 7098699 - 7098598
Alignment:
| Q |
145 |
agttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttgg |
244 |
Q |
| |
|
|||||| ||||||||||||| ||||||||| ||| |||||||||| | | |||||||||||| ||||||| || | || |||| |||||||||||| |
|
|
| T |
7098699 |
agttaattcaaaaggacttgatggaattgaaaaacaaattgcacatgtagaatcattgttacaagtagagtcacaagatgttcgtgctattggaatttgg |
7098600 |
T |
|
| Q |
245 |
gg |
246 |
Q |
| |
|
|| |
|
|
| T |
7098599 |
gg |
7098598 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 145 - 275
Target Start/End: Complemental strand, 7081828 - 7081698
Alignment:
| Q |
145 |
agttaactcaaaaggacttgttggaattgacaaatcaattgcacatttgaattcattgttacaaaaagagtcagaaaaggtccgtgtcattggaatttgg |
244 |
Q |
| |
|
|||||| ||||||||| || |||||||||| ||| ||| || || || | |||||||||||| ||||||| || | || |||| |||||||||||| |
|
|
| T |
7081828 |
agttaattcaaaaggagttattggaattgaaaaacaaatatcatatgtggaatcattgttacaagtagagtcacaagatgttcgtgctattggaatttgg |
7081729 |
T |
|
| Q |
245 |
ggcatgggaggtattggcaagacaactattg |
275 |
Q |
| |
|
|| ||| | |||||||| ||||||| ||||| |
|
|
| T |
7081728 |
gggatgagtggtattggaaagacaattattg |
7081698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 451 - 496
Target Start/End: Original strand, 7012932 - 7012977
Alignment:
| Q |
451 |
gagaaggattggtcgtatgaaggttcttattgttcttgatgatgtc |
496 |
Q |
| |
|
||||||| || ||||||||||||||||| |||||||||| |||||| |
|
|
| T |
7012932 |
gagaaggctttgtcgtatgaaggttcttgttgttcttgacgatgtc |
7012977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Original strand, 7023416 - 7023445
Alignment:
| Q |
467 |
atgaaggttcttattgttcttgatgatgtc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7023416 |
atgaaggttcttattgttcttgatgatgtc |
7023445 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 467 - 496
Target Start/End: Complemental strand, 7075448 - 7075419
Alignment:
| Q |
467 |
atgaaggttcttattgttcttgatgatgtc |
496 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7075448 |
atgaaggttcttattgttcttgatgatgtc |
7075419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 467 - 495
Target Start/End: Original strand, 7036514 - 7036542
Alignment:
| Q |
467 |
atgaaggttcttattgttcttgatgatgt |
495 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
7036514 |
atgaaggttcttattgttcttgatgatgt |
7036542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 229 - 271
Target Start/End: Complemental strand, 42859033 - 42858991
Alignment:
| Q |
229 |
tgtcattggaatttggggcatgggaggtattggcaagacaact |
271 |
Q |
| |
|
||||||||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
42859033 |
tgtcattggcatttggggcatgggcggtattgggaagacaact |
42858991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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