View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21003_high_4 (Length: 257)
Name: NF21003_high_4
Description: NF21003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21003_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 16 - 255
Target Start/End: Complemental strand, 42884888 - 42884647
Alignment:
| Q |
16 |
atcaagtgattgtaaggttaggcagaattctccaagtcaccggttccaaatctttagaggtaacacatgtcatgcacaccaatgcctgcaaaattctggt |
115 |
Q |
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| T |
42884888 |
atcaagtgattgtaaggttaggcagaattctccaagtcaccggttccaaatctttagaggtaacacatgtcatgcacaccaatgcctgcaaaattctggt |
42884789 |
T |
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| Q |
116 |
tttaataaaacacaagcaaatctgttaccaaatgcataaagt--tcttgtcagaactttattctgacaagcaacttaaagcaattcaattcaaactaaga |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42884788 |
tttaataaaacacaagcaaatctgttaccaaatgcataaaataagatattcagaactttattctgacaagcaacttaaagcaattcaattcaaactaaga |
42884689 |
T |
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| Q |
214 |
tagtataaattaaatcaattgtgaaaagtgatatcaagcatg |
255 |
Q |
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| T |
42884688 |
tagtataaattaaatcaattgtgaaaagtgatatcaagcatg |
42884647 |
T |
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