View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21003_low_1 (Length: 1426)

Name: NF21003_low_1
Description: NF21003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21003_low_1
NF21003_low_1
[»] chr2 (3 HSPs)
chr2 (933-1403)||(29276868-29277338)
chr2 (340-391)||(29277499-29277550)
chr2 (865-912)||(29277461-29277508)
[»] chr4 (4 HSPs)
chr4 (1097-1411)||(55857417-55857733)
chr4 (933-1076)||(55857252-55857393)
chr4 (334-391)||(55857034-55857091)
chr4 (865-912)||(55857082-55857129)
[»] chr1 (6 HSPs)
chr1 (1146-1289)||(46266694-46266834)
chr1 (1294-1411)||(16701894-16702013)
chr1 (1100-1279)||(16702086-16702258)
chr1 (1297-1365)||(46266900-46266968)
chr1 (863-912)||(46266547-46266596)
chr1 (979-1010)||(6763060-6763091)
[»] scaffold0175 (1 HSPs)
scaffold0175 (1294-1361)||(27380-27447)
[»] chr3 (1 HSPs)
chr3 (936-1010)||(30704162-30704236)


Alignment Details
Target: chr2 (Bit Score: 280; Significance: 1e-156; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 933 - 1403
Target Start/End: Complemental strand, 29277338 - 29276868
Alignment:
Q  933 tcaaagcataaaccatagaacttctctattgagaagttgagtgagaaaatgaaacatgccaagatttaaggtttagttcaatggtaccacttccacccgt 1032  Q
    ||||||||||||||||||||||||||||||  ||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  29277338 tcaaagcataaaccatagaacttctctattaggaagttgaaagagaaaatgaaacatgccaagatttaaggtttagttcaatggaaccacttccacccgt 29277239  T
Q  1033 tgtttaatgttaatataataatgtatatttcatcttagattcttnnnnnnnnnnnnnnnnnnnnctctattactttttacaactgacgcacatctttgaa 1132  Q
    |||||||||||||||  |||||||||| ||||||||||||||||                    ||||||||||||||||||||||| |||||| |||||    
T  29277238 tgtttaatgttaata--ataatgtatacttcatcttagattcttaaaaaaaaaaaaaaaa----ctctattactttttacaactgacacacatcattgaa 29277145  T
Q  1133 gatggagcaatctaagaagatagaataaacatgctaaacttcctaacattgaagaaaaagaaaagacaccattcagtgact-----gttagggtacatag 1227  Q
    |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||| | |||     ||||||||||||||    
T  29277144 gatggagcaatcaaagaagatagaataaacatgctaaacttccgaacattgaagaaa---aaaagacaccattcactaactgttaggttagggtacatag 29277048  T
Q  1228 aagtcaatttg-aaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatgaagctca---tctatcttgctttcatcatcccacatccca 1323  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||||||||||||||||||||    
T  29277047 aagtcaatttgaaaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatggagctcatcttctatcttgctttcatcatcccacatccca 29276948  T
Q  1324 ccatgttgcactttcatctcataactactatcatatgcaatgcaatcttgtactgcgcaaatcatgtgcactgtccactt 1403  Q
     ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||    
T  29276947 tcatattgcactttcatctcataactactatcatatgcaatgcaatcttgtactgcgcaaatcatgtgcattgtctactt 29276868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 9e-18
Query Start/End: Original strand, 340 - 391
Target Start/End: Complemental strand, 29277550 - 29277499
Alignment:
Q  340 gattatttaaaaatttatttcaaaacaaaggactttaatgataacaaagatt 391  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29277550 gattatttaaaaatttatttcaaaacaaaggaatttaatgataacaaagatt 29277499  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000006
Query Start/End: Original strand, 865 - 912
Target Start/End: Complemental strand, 29277508 - 29277461
Alignment:
Q  865 aacaaagattaaaacccaatttcaagagtcgcaaaaaggcaattataa 912  Q
    ||||||||||||||| |||||||||||||| |||||||||||||||||    
T  29277508 aacaaagattaaaacgcaatttcaagagtcacaaaaaggcaattataa 29277461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1097 - 1411
Target Start/End: Original strand, 55857417 - 55857733
Alignment:
Q  1097 ctctattactttttacaactgacgcacatctttgaagatggagcaatctaagaagatagaataaacatgct--aaacttcctaacattgaagaaaaagaa 1194  Q
    ||||||||||||||||||||||| |||||| ||||||||| ||||||| ||||||||||||||||||||||  |||||||| |||||||||||||||       
T  55857417 ctctattactttttacaactgacacacatcattgaagatgaagcaatcaaagaagatagaataaacatgctctaaacttccgaacattgaagaaaaa--- 55857513  T
Q  1195 aagacaccattcagtgactgttagggtacatagaagtcaatttgaaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatgaagctca- 1293  Q
    ||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||     
T  55857514 aagacaccattcactaactgttagggtacatagaagtcaatttgaaaagtaatacaactaattaatagcaaatgtaatacagtcaaaatatggagctcat 55857613  T
Q  1294 --tctatcttgctttcatcatcccacatcccaccatgttgcactttcatctcataactactatcatatgcaatgcaatcttgtactgcgcaaatcatgtg 1391  Q
      |||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  55857614 cttctatcttgctttcatcatcccacatcccatcatattgcactttcatctcataactattatcatatgcaatgcaatcttgtactgcgcaaatcatgtg 55857713  T
Q  1392 cactgtccacttaacaaaaa 1411  Q
    || || | |||||| |||||    
T  55857714 cattggctacttaataaaaa 55857733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 2e-56
Query Start/End: Original strand, 933 - 1076
Target Start/End: Original strand, 55857252 - 55857393
Alignment:
Q  933 tcaaagcataaaccatagaacttctctattgagaagttgagtgagaaaatgaaacatgccaagatttaaggtttagttcaatggtaccacttccacccgt 1032  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||    
T  55857252 tcaaagcataaaccatagaacttctctattgagaagttgaaagagaaaatgaaacatgccaagatttaaggtttagctcaatggaaccacttccacccgt 55857351  T
Q  1033 tgtttaatgttaatataataatgtatatttcatcttagattctt 1076  Q
    ||||||||||||  ||||||||||||| ||||||||||||||||    
T  55857352 tgtttaatgtta--ataataatgtatacttcatcttagattctt 55857393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 6e-19
Query Start/End: Original strand, 334 - 391
Target Start/End: Original strand, 55857034 - 55857091
Alignment:
Q  334 cccaatgattatttaaaaatttatttcaaaacaaaggactttaatgataacaaagatt 391  Q
    ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  55857034 cccaaagattatttaaaaatttatttcaaaacaaaggaatttaatgataacaaagatt 55857091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 865 - 912
Target Start/End: Original strand, 55857082 - 55857129
Alignment:
Q  865 aacaaagattaaaacccaatttcaagagtcgcaaaaaggcaattataa 912  Q
    ||||||||||||||| ||||||||||||||  || |||||||||||||    
T  55857082 aacaaagattaaaacgcaatttcaagagtcaaaacaaggcaattataa 55857129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 3e-45; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 3e-45
Query Start/End: Original strand, 1146 - 1289
Target Start/End: Original strand, 46266694 - 46266834
Alignment:
Q  1146 aagaagatagaataaacatgctaaacttcctaacattgaagaaaaagaaaagacaccattcagtgactgttagggtacatagaagtcaatttgaaaagta 1245  Q
    ||||||||| || ||||||||||||||||||||| |||||||||||   ||||||||||||| | ||||||||||||||||||||||||||| |||||||    
T  46266694 aagaagataaaagaaacatgctaaacttcctaaccttgaagaaaaa---aagacaccattcactaactgttagggtacatagaagtcaatttaaaaagta 46266790  T
Q  1246 atacaactaattaatagcaaatgtaatacagtcaaaatatgaag 1289  Q
     ||||||||||||||||||||||||||| ||||||| |||||||    
T  46266791 gtacaactaattaatagcaaatgtaatatagtcaaattatgaag 46266834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 77; E-Value: 5e-35
Query Start/End: Original strand, 1294 - 1411
Target Start/End: Complemental strand, 16702013 - 16701894
Alignment:
Q  1294 tctatcttgctttcatcat--cccacatcccaccatgttgcactttcatctcataactactatcatatgcaatgcaatcttgtactgcgcaaatcatgtg 1391  Q
    |||||||||||||||||||  ||||||||||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| ||    
T  16702013 tctatcttgctttcatcatatcccacatcccatcatattacactttcatctcataactactatcatgtgcaatgcaatcttgtactgcgcagatcatatg 16701914  T
Q  1392 cactgtccacttaacaaaaa 1411  Q
    ||||| | ||||||||||||    
T  16701913 cactgcctacttaacaaaaa 16701894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 6e-25
Query Start/End: Original strand, 1100 - 1279
Target Start/End: Complemental strand, 16702258 - 16702086
Alignment:
Q  1100 tattactttttacaactgacgcacatctttgaagatggagcaatctaagaagatagaataaacatgctaaacttcctaacattgaagaaaaagaaaagac 1199  Q
    |||||||||||||| |||||  |||||  | || |||||| ||||| ||| |||| ||||||||||||||||||||||||  ||||||||||    ||||    
T  16702258 tattactttttacagctgac--acatcactcaaaatggagtaatctgagatgataaaataaacatgctaaacttcctaaccctgaagaaaaa----agac 16702165  T
Q  1200 accattcagtgactgttagggtacatagaagtcaatttgaaaagtaatacaactaattaatagcaaatgtaatacagtca 1279  Q
    |   |||| | ||||||||| ||||||||||||| ||| |||| |||||||| ||||||||||||||||||||| |||||    
T  16702164 aatgttcactaactgttagg-tacatagaagtcattttaaaaattaatacaattaattaatagcaaatgtaataaagtca 16702086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 4e-23
Query Start/End: Original strand, 1297 - 1365
Target Start/End: Original strand, 46266900 - 46266968
Alignment:
Q  1297 atcttgctttcatcatcccacatcccaccatgttgcactttcatctcataactactatcatatgcaatg 1365  Q
    ||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||||||||||    
T  46266900 atcttgctttcatcatcccacatcccatcatactgcactttcatctcataactactatcatatgcaatg 46266968  T

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Target: chr1; HSP #5
Raw Score: 42; E-Value: 0.00000000000004
Query Start/End: Original strand, 863 - 912
Target Start/End: Original strand, 46266547 - 46266596
Alignment:
Q  863 taaacaaagattaaaacccaatttcaagagtcgcaaaaaggcaattataa 912  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||    
T  46266547 taaacaaagattaaaacccaatttcaagagtaacaaaaaggcaattataa 46266596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 979 - 1010
Target Start/End: Original strand, 6763060 - 6763091
Alignment:
Q  979 aaatgaaacatgccaagatttaaggtttagtt 1010  Q
    ||||||||||||||||||||||||||||||||    
T  6763060 aaatgaaacatgccaagatttaaggtttagtt 6763091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0175 (Bit Score: 56; Significance: 2e-22; HSPs: 1)
Name: scaffold0175
Description:

Target: scaffold0175; HSP #1
Raw Score: 56; E-Value: 2e-22
Query Start/End: Original strand, 1294 - 1361
Target Start/End: Original strand, 27380 - 27447
Alignment:
Q  1294 tctatcttgctttcatcatcccacatcccaccatgttgcactttcatctcataactactatcatatgc 1361  Q
    |||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||    
T  27380 tctatcttgctttcatcatcccacatcccatcatattgcactttcatctcataaatactatcatatgc 27447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 936 - 1010
Target Start/End: Original strand, 30704162 - 30704236
Alignment:
Q  936 aagcataaaccatagaacttctctattgagaagttgagtgagaaaatgaaacatgccaagatttaaggtttagtt 1010  Q
    |||||||| |||||  | ||||| ||| |||||||||  || |||||| |||||||| |||||||||||||||||    
T  30704162 aagcataatccatatgaattctcgattaagaagttgaaagataaaatggaacatgccgagatttaaggtttagtt 30704236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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