View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21003_low_3 (Length: 413)
Name: NF21003_low_3
Description: NF21003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21003_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 156; Significance: 9e-83; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 23 - 251
Target Start/End: Complemental strand, 22806634 - 22806408
Alignment:
| Q |
23 |
gcgtggttgagacaacataggagggatacgttgaaattaaacnnnnnnnttatctgaagagttaatgttaatctaacggctgttattgattgctctcatc |
122 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22806634 |
gcgtgggtgagacaacataggagggat--gttgaaattaaacaaaaaaattatctgaagagttaatgttaatctaacggctgttattgattgctctcatc |
22806537 |
T |
|
| Q |
123 |
tctcaagttaaaaattcttctcctttcaagtgcactttcatacnnnnnnntaaaataaatggatgttatggctggaagggctaaccaaaattcaggcaat |
222 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22806536 |
tctcacgttaaaaattcctctcctttcaagtgcactttcatacaaaaaaaataaataaatggatgttatggctggaagggctaaccaaaattcaggcaat |
22806437 |
T |
|
| Q |
223 |
taagattatatagatagattagatatata |
251 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
22806436 |
taagattatatagatagattagatatata |
22806408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 354 - 406
Target Start/End: Complemental strand, 22806252 - 22806200
Alignment:
| Q |
354 |
aaggtaaatccatcctatttctaaaaaagtctgttctaatttgagctagaata |
406 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
22806252 |
aaggtaaatccatcctatttctaaaaaagtctgttctaatttgagctggaata |
22806200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 22806352 - 22806310
Alignment:
| Q |
254 |
aaaggaaacttgccagggaagcaagctccataaaatatattag |
296 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22806352 |
aaaggaaacttgccagggaagcaagctccataaaatatattag |
22806310 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University