View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21003_low_7 (Length: 237)

Name: NF21003_low_7
Description: NF21003
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21003_low_7
NF21003_low_7
[»] chr8 (4 HSPs)
chr8 (124-223)||(42884170-42884269)
chr8 (1-59)||(42884334-42884393)
chr8 (1-56)||(39192465-39192521)
chr8 (1-40)||(35469970-35470009)
[»] chr6 (2 HSPs)
chr6 (1-59)||(4149193-4149252)
chr6 (11-40)||(3011410-3011439)
[»] chr5 (2 HSPs)
chr5 (1-59)||(1349418-1349477)
chr5 (11-59)||(315033-315083)
[»] chr7 (7 HSPs)
chr7 (1-59)||(8806363-8806422)
chr7 (1-59)||(34790344-34790403)
chr7 (1-39)||(23682016-23682054)
chr7 (1-59)||(25529859-25529919)
chr7 (13-56)||(23095134-23095178)
chr7 (1-40)||(34590219-34590258)
chr7 (12-59)||(31443028-31443076)
[»] chr4 (5 HSPs)
chr4 (1-38)||(30220874-30220911)
chr4 (1-37)||(8037389-8037425)
chr4 (1-40)||(9356956-9356995)
chr4 (1-42)||(44286566-44286607)
chr4 (1-41)||(35978495-35978535)
[»] chr1 (4 HSPs)
chr1 (1-59)||(7332670-7332730)
chr1 (1-59)||(49827166-49827225)
chr1 (1-50)||(49751119-49751168)
chr1 (1-40)||(51507244-51507283)
[»] chr3 (6 HSPs)
chr3 (1-57)||(49323500-49323556)
chr3 (4-42)||(7316596-7316634)
chr3 (1-55)||(33091919-33091973)
chr3 (1-41)||(12727197-12727237)
chr3 (1-59)||(51295010-51295069)
chr3 (12-48)||(35532888-35532924)
[»] chr2 (7 HSPs)
chr2 (1-59)||(29148705-29148764)
chr2 (1-59)||(18647911-18647971)
chr2 (5-57)||(28209697-28209750)
chr2 (1-40)||(18832664-18832703)
chr2 (1-40)||(39095929-39095968)
chr2 (5-57)||(2091283-2091335)
chr2 (1-56)||(15318486-15318542)


Alignment Details
Target: chr8 (Bit Score: 100; Significance: 1e-49; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 124 - 223
Target Start/End: Complemental strand, 42884269 - 42884170
Alignment:
Q  124 agattttctttcaagaaaatcccaaacaaacgggccctaaggcaatcattgaataaatggtgtggtggatgagttatggaacctgctcaaagtgccatct 223  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42884269 agattttctttcaagaaaatcccaaacaaacgggccctaaggcaatcattgaataaatggtgtggtggatgagttatggaacctgctcaaagtgccatct 42884170  T

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Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 42884393 - 42884334
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataaat-ttttaacaaaatgga 59  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  42884393 aaagctactagaaatagcttttcattttgaggctaaaaataaattttttaacaaaatgga 42884334  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 39192521 - 39192465
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat-aaatttttaacaaaat 56  Q
    ||||||||| ||||||||||||||||||||||||| |||| |  |||||||||||||    
T  39192521 aaagctacttgaaatagcttttcattttgaggctagaaatgatttttttaacaaaat 39192465  T

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Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 35469970 - 35470009
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat 40  Q
    ||||||||||||||||||||||| |||||||| |||||||    
T  35469970 aaagctactagaaatagcttttcgttttgaggataaaaat 35470009  T

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Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 4149252 - 4149193
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataa-atttttaacaaaatgga 59  Q
    ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  4149252 aaagctacttgaaatagcttttcattttgaggctaaaaataatttttttaacaaaatgga 4149193  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 40
Target Start/End: Original strand, 3011410 - 3011439
Alignment:
Q  11 gaaatagcttttcattttgaggctaaaaat 40  Q
    ||||||||||||||||||||||||||||||    
T  3011410 gaaatagcttttcattttgaggctaaaaat 3011439  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 1349477 - 1349418
Alignment:
Q  1 aaagctactag-aaatagcttttcattttgaggctaaaaataaatttttaacaaaatgga 59  Q
    ||||||||||| ||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  1349477 aaagctactaggaaatagcttttcattttgaggctaaaaataattttttaaaaaaatgga 1349418  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 59
Target Start/End: Complemental strand, 315083 - 315033
Alignment:
Q  11 gaaatagcttttcattttgaggctaaaaataa--atttttaacaaaatgga 59  Q
    |||||||||||||||||||||||||||| |||   ||||||||||||||||    
T  315083 gaaatagcttttcattttgaggctaaaagtaattttttttaacaaaatgga 315033  T

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Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 8806363 - 8806422
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataaat-ttttaacaaaatgga 59  Q
    ||||||||| |||||||||||||||||||||||||||||| | | |||||||||||||||    
T  8806363 aaagctacttgaaatagcttttcattttgaggctaaaaatgattgttttaacaaaatgga 8806422  T

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Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 34790403 - 34790344
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat-aaatttttaacaaaatgga 59  Q
    ||||||||| | |||||||||||||||||||||||||||| |  ||||||||||||||||    
T  34790403 aaagctacttggaatagcttttcattttgaggctaaaaatgatttttttaacaaaatgga 34790344  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 23682054 - 23682016
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaa 39  Q
    |||||||||||||||| ||||||||||||||||||||||    
T  23682054 aaagctactagaaataacttttcattttgaggctaaaaa 23682016  T

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Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 25529919 - 25529859
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataa--atttttaacaaaatgga 59  Q
    |||||||||  ||||||||||||||||||||||||||||| |   ||||||||||||||||    
T  25529919 aaagctacttcaaatagcttttcattttgaggctaaaaatgattttttttaacaaaatgga 25529859  T

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Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 56
Target Start/End: Original strand, 23095134 - 23095178
Alignment:
Q  13 aatagcttttcattttgaggctaaaaataa-atttttaacaaaat 56  Q
    ||||||||||||||||||||||||||||||  |||||||||||||    
T  23095134 aatagcttttcattttgaggctaaaaataatttttttaacaaaat 23095178  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 34590258 - 34590219
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat 40  Q
    ||||||||||| || |||||||||||||||||||||||||    
T  34590258 aaagctactaggaacagcttttcattttgaggctaaaaat 34590219  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 31443028 - 31443076
Alignment:
Q  12 aaatagcttttcattttgaggctaaaaat-aaatttttaacaaaatgga 59  Q
    ||||||||||| ||||||||||||||||| |  ||||||||||||||||    
T  31443028 aaatagctttttattttgaggctaaaaatgatttttttaacaaaatgga 31443076  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30220874 - 30220911
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaa 38  Q
    ||||||||||||||||||||||||||||||||||||||    
T  30220874 aaagctactagaaatagcttttcattttgaggctaaaa 30220911  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8037389 - 8037425
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaa 37  Q
    ||||||||| |||||||||||||||||||||||||||    
T  8037389 aaagctacttgaaatagcttttcattttgaggctaaa 8037425  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9356995 - 9356956
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat 40  Q
    |||||||||||||||||||||||||||| ||| |||||||    
T  9356995 aaagctactagaaatagcttttcattttaaggttaaaaat 9356956  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 44286566 - 44286607
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataa 42  Q
    ||||||||| ||||||| |||| |||||||||||||||||||    
T  44286566 aaagctacttgaaatagttttttattttgaggctaaaaataa 44286607  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 35978535 - 35978495
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaata 41  Q
    |||||| ||||||||||||||||||||||| | ||||||||    
T  35978535 aaagctgctagaaatagcttttcattttgaagttaaaaata 35978495  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 7332670 - 7332730
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataaa--tttttaacaaaatgga 59  Q
    ||||||| | ||||||||||||||||||||| |||||||||||  ||||||||||||||||    
T  7332670 aaagctatttgaaatagcttttcattttgagactaaaaataaaattttttaacaaaatgga 7332730  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 49827166 - 49827225
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat-aaatttttaacaaaatgga 59  Q
    ||||||||| | |||||||||||||||||||||||||||| |  ||||||||||||||||    
T  49827166 aaagctacttggaatagcttttcattttgaggctaaaaatgatttttttaacaaaatgga 49827225  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 49751119 - 49751168
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataaatttttaa 50  Q
    ||||||||||| | |||||||||||||||||||||||||| | |||||||    
T  49751119 aaagctactaggattagcttttcattttgaggctaaaaatgattttttaa 49751168  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51507283 - 51507244
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat 40  Q
    ||||||||||| |||||||||||||||||||| |||||||    
T  51507283 aaagctactaggaatagcttttcattttgaggttaaaaat 51507244  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 49323556 - 49323500
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataaatttttaacaaaatg 57  Q
    ||||||||||||| || ||||| ||||||||||||| ||||| ||||||||||||||    
T  49323556 aaagctactagaagtatctttttattttgaggctaataataattttttaacaaaatg 49323500  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 4 - 42
Target Start/End: Original strand, 7316596 - 7316634
Alignment:
Q  4 gctactagaaatagcttttcattttgaggctaaaaataa 42  Q
    ||||||||||||||||||||||||| |||||||||||||    
T  7316596 gctactagaaatagcttttcatttttaggctaaaaataa 7316634  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33091919 - 33091973
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataaatttttaacaaaa 55  Q
    ||||||||| ||||||| |||||||||||||||||||||| | ||||| ||||||    
T  33091919 aaagctacttgaaatagattttcattttgaggctaaaaatgatttttttacaaaa 33091973  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 12727197 - 12727237
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaata 41  Q
    ||||||||| | |||||||||||||||||||||||||||||    
T  12727197 aaagctacttggaatagcttttcattttgaggctaaaaata 12727237  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 51295069 - 51295010
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat-aaatttttaacaaaatgga 59  Q
    ||||||||| | ||||||||||||||| |||||||||||| |  ||||||||||||||||    
T  51295069 aaagctacttggaatagcttttcatttcgaggctaaaaatgatttttttaacaaaatgga 51295010  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 12 - 48
Target Start/End: Original strand, 35532888 - 35532924
Alignment:
Q  12 aaatagcttttcattttgaggctaaaaataaattttt 48  Q
    |||||| |||||||||||||||||||||||| |||||    
T  35532888 aaatagattttcattttgaggctaaaaataatttttt 35532924  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 29148705 - 29148764
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat-aaatttttaacaaaatgga 59  Q
    ||||||||||| |||||||||||||||||||||||||| | |  ||||||||||||||||    
T  29148705 aaagctactaggaatagcttttcattttgaggctaaaattgagttttttaacaaaatgga 29148764  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 18647911 - 18647971
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaataa--atttttaacaaaatgga 59  Q
    ||||||||| |||||||||||||||||||| ||||||||| |   ||||||||||||||||    
T  18647911 aaagctacttgaaatagcttttcattttgaagctaaaaatgattttttttaacaaaatgga 18647971  T

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Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Original strand, 28209697 - 28209750
Alignment:
Q  5 ctactagaaatagcttttcattttgaggctaaaaat-aaatttttaacaaaatg 57  Q
    |||||||||||||||||||||||||||| ||||| | || ||||||||||||||    
T  28209697 ctactagaaatagcttttcattttgaggttaaaattgaattttttaacaaaatg 28209750  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 18832703 - 18832664
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat 40  Q
    ||||||| ||| ||||||||||||||||||||||||||||    
T  18832703 aaagctattaggaatagcttttcattttgaggctaaaaat 18832664  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 39095968 - 39095929
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat 40  Q
    |||| |||| ||||||||||||||||||||||||||||||    
T  39095968 aaagttacttgaaatagcttttcattttgaggctaaaaat 39095929  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 2091335 - 2091283
Alignment:
Q  5 ctactagaaatagcttttcattttgaggctaaaaataaatttttaacaaaatg 57  Q
    ||||||| |||||||||||||||||||| ||| ||| | |||| |||||||||    
T  2091335 ctactaggaatagcttttcattttgaggttaataatgatttttaaacaaaatg 2091283  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 15318486 - 15318542
Alignment:
Q  1 aaagctactagaaatagcttttcattttgaggctaaaaat-aaatttttaacaaaat 56  Q
    ||||||||| |||||||||||||||||| | ||||||||| |  |||||||||||||    
T  15318486 aaagctacttgaaatagcttttcattttaaagctaaaaatgatttttttaacaaaat 15318542  T

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