View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_high_1 (Length: 458)
Name: NF21004_high_1
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 10 - 440
Target Start/End: Complemental strand, 42537463 - 42537033
Alignment:
| Q |
10 |
aagaaaatggttggtgtgtaatgcttgatttatgtgcattgagaccaaaagaaagagacactttaggtatgtctatgtttaaacctgattttatggtttg |
109 |
Q |
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| T |
42537463 |
aagaaaatggttggtgtgtaatgcttgatttatgtgcattgagaccaaaagaaagagacactttaggtatgtctatgtttaaacctgattttatggtttg |
42537364 |
T |
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| Q |
110 |
ttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatcaagtatttcttctcttaaagatttaggaaatgctaca |
209 |
Q |
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| T |
42537363 |
ttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatcaagtatttcttctcttaaagatttaggaaatgctaca |
42537264 |
T |
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| Q |
210 |
agcataggaattataagtcttgttcctacatttgcacaatgtcacacttctagctctcgtcgaaatgatagtgcaccaccaaactctggattattaggac |
309 |
Q |
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| T |
42537263 |
agcattggaattataagtcttgttcctacatttgcacaatgtcacacttctagctctcatcaaaacgagagtgcaccgccaaacgctgaattattaggat |
42537164 |
T |
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| Q |
310 |
tcgcttctcctgagaaccagagggttaagactaaagaagagcaaaatgaggtatcatcatcatcagaaattgtggagctacaaggcatggacatgaatga |
409 |
Q |
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| T |
42537163 |
tcgcttctcctgagaaccagagggataagactaaagaagagcaaaatgaggtatcatcattatcagaaattgtggagttacaaggcatggacatgaatga |
42537064 |
T |
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| Q |
410 |
tgaaagattggaaattgagtgtagaggatta |
440 |
Q |
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| T |
42537063 |
tgaaagattggaaattgagtgtagaggatta |
42537033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 440
Target Start/End: Complemental strand, 42530992 - 42530919
Alignment:
| Q |
366 |
tcatcatcagaaattgtggagctacaaggcatggacatgaatgatgaaagattggaaattgagtgtagaggatta |
440 |
Q |
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| T |
42530992 |
tcatcgtcggaaatcgtggagctacaaggcatgaacatgaagaatgaaaga-tggaaattgtatgtagaggatta |
42530919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 106 - 172
Target Start/End: Original strand, 45958115 - 45958181
Alignment:
| Q |
106 |
tttgttcattttacaaaatatttggtgaaaatccatctgggtttggttgtttatttgtcaaaaaatc |
172 |
Q |
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| T |
45958115 |
tttgttcattctacaaagtttttggagaaaatccatctggttttggttgcctttttgtcaagaaatc |
45958181 |
T |
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