View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_high_2 (Length: 451)
Name: NF21004_high_2
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 46 - 272
Target Start/End: Complemental strand, 31045855 - 31045623
Alignment:
| Q |
46 |
ttaatacccgtgaaaacttttggcgctaacgttgctatatttaaagtttgattcgttcaatttt-ccaccttcaacttcaaaccatacgtattactaagt |
144 |
Q |
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| T |
31045855 |
ttaatacccgtgaaaacttttggcgctaacgttgctatatttaaagtttgattcgttcaatttttccaccttcaacttcaaaccatacgtattactaagt |
31045756 |
T |
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| Q |
145 |
caatcaataaacgagttttcttgaaaataaaaagagtaaaagctccggtcaagacacaatatatatacgtcctt-----gagtactatccccatctcaaa |
239 |
Q |
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||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
31045755 |
caagcaataaatgagttttcttgaaaataaaacaagtaaaagctccggtcaagacacaatatatatacgtccttgagttgagtactatccccatctcaaa |
31045656 |
T |
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| Q |
240 |
tcaacaaaatatataagaaacgctcacccaata |
272 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31045655 |
tcaacaaaatatataagaaacgctcacccaata |
31045623 |
T |
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