View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_high_23 (Length: 201)
Name: NF21004_high_23
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 76; Significance: 2e-35; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 40353176 - 40353271
Alignment:
| Q |
103 |
ttctttcgtaatcatataagatgtaggacttgtttacaatgttatactggatacatataagttgctgcaaacaaatatattatactataaagaaat |
198 |
Q |
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| T |
40353176 |
ttctttcgtaattatataagatctaggacttgtttacaatattataccggatacatataagttcctgcaaacaaatatattatactataaagaaat |
40353271 |
T |
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Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 40353117 - 40353185
Alignment:
| Q |
17 |
agctgcacatacaatataatatgcaagtacgatttcatatagcctgtagttatttctttttcttccgta |
85 |
Q |
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| T |
40353117 |
agctgcacatacaatataatatgcaagtacgatttcatatagcctgtagttatttctttttctttcgta |
40353185 |
T |
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