View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_high_5 (Length: 425)
Name: NF21004_high_5
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 13 - 410
Target Start/End: Original strand, 38720359 - 38720759
Alignment:
| Q |
13 |
tattcgtcactggcacataccagagaaaaatgatcggctaaaaacacacnnnnnnn---tgatgataataagattgaagaggattgtaacaattataaat |
109 |
Q |
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| T |
38720359 |
tattcgtcactggcacataacagagaaaaatgatcggctaaaaacacaaaaaaaaaaaatgatgataataagatttaagaggattgtaacaattataaat |
38720458 |
T |
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| Q |
110 |
atatttaacccaaaacttgattatatttttgtacaaaatatgattatagacaaagtttggttgtttcatagaaaaaactcaacagacaaatatatatcat |
209 |
Q |
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| T |
38720459 |
atatttaacccaaaacgtgattatatttttgtacaaaatatgattatagacaaagtttggttgtttcatagaaaaaactcaacagacaaatatatatcat |
38720558 |
T |
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| Q |
210 |
gatgtatatcaaagtgttcaaaattcagagattnnnnnnntaataaaaatagggtttggacttacaaagcgtatcgtttacttgaaacctatttttctca |
309 |
Q |
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| T |
38720559 |
gatgtatatcaaagtgttcaaaattcagagattaaaaaaataataaaaatagggtttggacttacaaagtgtatcgtttacttgaaacctatttttctca |
38720658 |
T |
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| Q |
310 |
gcccaatgactgtaaccagctgagggtttcactgcccagccatgtttgccgcccacatgaaatttgtaagcagatgacaatgatgagctgagaatcatca |
409 |
Q |
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| T |
38720659 |
gcccaatgactgtaaccagctgagggtttcactgcccagccatgtttgccgcccacatgaaatttgtaagcagatgacaatgatgagctgagaatcatca |
38720758 |
T |
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| Q |
410 |
t |
410 |
Q |
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| T |
38720759 |
t |
38720759 |
T |
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