View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_high_6 (Length: 406)
Name: NF21004_high_6
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 319; Significance: 1e-180; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 36 - 390
Target Start/End: Complemental strand, 13892209 - 13891856
Alignment:
| Q |
36 |
aaccgtcttgcttccacccaaccacattggttcttggagtgaagcattcaaaagaatgagaaacctgatttagaagaaactataggcaatgccattatga |
135 |
Q |
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| T |
13892209 |
aaccgtcttgcttccacccaaccacattggttcttggagtaaagcattcaaaagaatgagaaacctgatttaaaagaaactataggcaatgccattatga |
13892110 |
T |
|
| Q |
136 |
aataagatccaatagtcaaacataatgaacctaaactccatatatttctttatcgttctttacattcaaacatatctcaaatataatgaagaatattaat |
235 |
Q |
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||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
13892109 |
aataagatccaatggtcaaacataatgaacctaaactccatgtatttctttatcgttctttacattcaaacacatctcaaatataatgaagaatattaat |
13892010 |
T |
|
| Q |
236 |
taatttttaaacaaactatgtatcataccccttaatcataccaatatttattatcaattcacttctaactaatcttttaagtatttatgaatttcttcat |
335 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
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| T |
13892009 |
taatttttaaacaaactatgtatcataccccttaatcataccaatatttattatcaattcacttctaactaat-gtttaagtatttatgaattttttcat |
13891911 |
T |
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| Q |
336 |
cacaacgtcgatgaagattaactttcaatccatgtttcatgtaaagtgtcaaaga |
390 |
Q |
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| T |
13891910 |
cacaacgtcgatgaagattaactttcaatccatgtttcatgtaaagtgtcaaaga |
13891856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 232 - 390
Target Start/End: Complemental strand, 13889104 - 13888947
Alignment:
| Q |
232 |
taattaatttttaaacaaactatgtatcataccccttaatcataccaatatttattatcaattcacttctaactaatcttttaagtatttatgaatttct |
331 |
Q |
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| T |
13889104 |
taattaatttttaaacaaactatatatcatcatccttaatcacaccaacatttaatatcaattcacttctaactaatcttc-aagtatttatgaatttct |
13889006 |
T |
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| Q |
332 |
tcatcacaacgtcgatgaagattaactttcaatccatgtttcatgtaaagtgtcaaaga |
390 |
Q |
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| T |
13889005 |
tcatcacaacgcctatgaagattaacttttaatccatgtttcatgtaaagtgtcaaaga |
13888947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 240 - 390
Target Start/End: Complemental strand, 13893642 - 13893494
Alignment:
| Q |
240 |
ttttaaacaaactatgtatcataccccttaatcataccaatatttattatcaattcacttctaactaatcttttaagtatttatgaatttcttcatcaca |
339 |
Q |
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| T |
13893642 |
ttttaaacaaactatatatcatcatcct-aatcatatcaacatttattatcaattcacttctaactaaacttaaaac-attcatgaatttcttcttcaca |
13893545 |
T |
|
| Q |
340 |
acgtcgatgaagattaactttcaatccatgtttcatgtaaagtgtcaaaga |
390 |
Q |
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| T |
13893544 |
acatctatgaaggttaactttcaatctatgcttcacgaaaagtgtcaaaga |
13893494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 220 - 389
Target Start/End: Original strand, 13895587 - 13895756
Alignment:
| Q |
220 |
aatgaagaatattaattaatttttaaacaaactatgtat-cataccccttaatcataccaatatttattatcaattcacttctaactaatcttttaagta |
318 |
Q |
| |
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|||||| |||| ||||| ||||| |||||||||| ||| ||| || |||||||| ||| ||| ||| ||||||||| ||||||| | ||| || || |
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| T |
13895587 |
aatgaacaataataattcattttaaaacaaactacatattcatcatccataatcatagcaacattcattctcaattcacatctaacttaccttcaaa-ta |
13895685 |
T |
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| Q |
319 |
tttatgaatttcttcatcacaacgtcgatgaagattaactttcaatccatgtttcatgtaaagtgtcaaag |
389 |
Q |
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| T |
13895686 |
tttatgaatttcttcatcacaacgcctatgaaggttaacttttaatccatgcttcatgtaaagtgtcaaag |
13895756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 13889235 - 13889140
Alignment:
| Q |
130 |
ttatgaaataagatccaatag-tcaaacataatgaacctaaactccatatatttctttatcgttctttacattcaaacatatctcaaatataatga |
224 |
Q |
| |
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|||||||| ||||||||||| | |||| ||| ||||||||||||||||||||||||||| ||||||||||| | ||| |||||||||||||||| |
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| T |
13889235 |
ttatgaaagaagatccaatatattcaacacaattaacctaaactccatatatttctttatcattctttacatttacacacatctcaaatataatga |
13889140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 268 - 389
Target Start/End: Original strand, 13890466 - 13890586
Alignment:
| Q |
268 |
taatcataccaatatttattatcaattcacttctaactaatcttttaagtatttatgaatttcttcatcacaacgtcgatgaagattaactttcaatcca |
367 |
Q |
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||||||| ||||||||||| |||||| || ||||||| | ||| || ||||||||| |||||||||||||||| | |||||| |||||||| |||||| |
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| T |
13890466 |
taatcatcacaatatttattctcaattaacatctaacttaacttcaaa-tatttatgagtttcttcatcacaacgcctatgaaggttaacttttaatcca |
13890564 |
T |
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| Q |
368 |
tgtttcatgtaaagtgtcaaag |
389 |
Q |
| |
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| || ||||||| |||||||| |
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| T |
13890565 |
tactttatgtaaaatgtcaaag |
13890586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 112 - 218
Target Start/End: Complemental strand, 13894609 - 13894505
Alignment:
| Q |
112 |
aaactataggcaatgccattatgaaataagatccaatagtca-aacataatgaacctaaactccatatatttctttatcgttctttacattcaaacatat |
210 |
Q |
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|||||||||||||| ||||||| ||| ||||||||| | |||| ||||||||||||| |||||||||| ||||| ||||||||||| ||||| || |
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| T |
13894609 |
aaactataggcaataccattataaaa---gatccaatatatacaacaaaatgaacctaaacatcatatatttccttatcattctttacatttaaacacat |
13894513 |
T |
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| Q |
211 |
ctcaaata |
218 |
Q |
| |
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|||||||| |
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| T |
13894512 |
ctcaaata |
13894505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 268 - 391
Target Start/End: Original strand, 1033628 - 1033750
Alignment:
| Q |
268 |
taatcataccaatatttattatcaattcacttctaactaatcttttaagtatttatgaatttcttcatcacaacgtcgatgaagattaactttcaatcca |
367 |
Q |
| |
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|||||||| ||||||||||| ||||||||| ||||||| | ||| || |||||||||||||||||||||||||| | |||||| |||||||| |||||| |
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| T |
1033628 |
taatcatagcaatatttattctcaattcacatctaacttaccttcaaa-tatttatgaatttcttcatcacaacgcctatgaaggttaacttttaatcca |
1033726 |
T |
|
| Q |
368 |
tgtttcatgtaaagtgtcaaagat |
391 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
1033727 |
tgcttcatgtaaagtgtcaaagat |
1033750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 1033355 - 1033289
Alignment:
| Q |
41 |
tcttgcttccacccaaccacattggttcttggagtgaagcattcaaaagaatgagaaacctgattta |
107 |
Q |
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|||||||||| || || ||||||||||||||||||||||||| ||||||||| | | |||||||| |
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| T |
1033355 |
tcttgcttcctcctgactacattggttcttggagtgaagcatttgaaagaatgatagagctgattta |
1033289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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