View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21004_high_8 (Length: 369)
Name: NF21004_high_8
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_high_8 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 38 - 346
Target Start/End: Complemental strand, 758367 - 758059
Alignment:
| Q |
38 |
ttcacaaatcgtatcatcaaggaacacataaaagtgttcaatatggtctactgtttcagtggaaaagacttttgtacaacgcatttaggcaaagaaggag |
137 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
758367 |
ttcacaaatcgtatcatcaaggaacacataaaagtgttcaatatgatctactgtttcagtggaaaagacttttgtacaacgcatttaggcaaagaaggag |
758268 |
T |
|
| Q |
138 |
aggagatagatacttaagcatcatataggattgcttattgatgaagtctccactattgctattaccttactatatttatcatctatgcaaatatttacca |
237 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| | |
|
|
| T |
758267 |
aggagatagatacttaagcatcatataggattgcttattgatgaagtctccactattgctattaccttactatattcatcatctatgcaaatatttacta |
758168 |
T |
|
| Q |
238 |
tgttttcttataatttaaatgaagttaaaaattctatgttgatataagcatgggtaactcttaaaaatgttatcaactattccctccgtattttattata |
337 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
758167 |
tgttttcttataatttaaatgaagttaaaaattctatgttgatataagcatgggtaacttttaaaaatgttatcaactattccctccgtattttattata |
758068 |
T |
|
| Q |
338 |
aatcatttt |
346 |
Q |
| |
|
||| ||||| |
|
|
| T |
758067 |
aataatttt |
758059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University