View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21004_low_1 (Length: 531)
Name: NF21004_low_1
Description: NF21004
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21004_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 505; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 1 - 513
Target Start/End: Original strand, 35225342 - 35225854
Alignment:
| Q |
1 |
aaaaagataaatacttttacaaaattttcatctagcttaaaagttcaatttatttaaaatggaacatactgcataaacttcattgatgaacatgcagaaa |
100 |
Q |
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| T |
35225342 |
aaaaagataaatacttttacaaaattttcatctagcttaaaagttcaatttatttaaaatggaacatactgcataaacttcattgatgaacatgcagaaa |
35225441 |
T |
|
| Q |
101 |
ttagtggtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttcttgatctgctctggtgtagcatctggaaact |
200 |
Q |
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| T |
35225442 |
ttagtcgtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttcttgatctgctctggtgtagcatctggaaact |
35225541 |
T |
|
| Q |
201 |
agtcaaaattactaaccaattattagaaaatacaaatgtctaaaatactatcagcaattgcatttgcggctgtgatgccaaggtttttgatatcaccgtg |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
35225542 |
agtcaaaattactaaccaattattagaaaatacaaatgtctaaaatactatcagcaattgcatttgcggctgtgatgccaaggtttttgatgtcaccgtg |
35225641 |
T |
|
| Q |
301 |
accacattgcaattgcatatgcttcagctgtatttgaatgcaaatttctataatcttaatgttaacaacacaactgcaacacgaccgcaaatgcattttt |
400 |
Q |
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| T |
35225642 |
accacattgcaattgcatatgcttcagctgtatttgaatgcaaatttctataatcttaatgttaacaacacaactgcaacacgaccgcaaatgcattttt |
35225741 |
T |
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| Q |
401 |
aacaatgtgaaatgctatatatcttacaaaaaataatatttcgatacacaaatttgacaataattaaaacagttagcaacttagcatagtggcgaattac |
500 |
Q |
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| T |
35225742 |
aacaatgtgaaatgctatatatcttacaaaaaataatatttcgatacacaaatttgacaataattaaaacagttagcaacttagcatagtggcgaattac |
35225841 |
T |
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| Q |
501 |
atttagtggatgg |
513 |
Q |
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||||||||||||| |
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| T |
35225842 |
atttagtggatgg |
35225854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 3e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 72 - 197
Target Start/End: Original strand, 31172660 - 31172785
Alignment:
| Q |
72 |
cataaacttcattgatgaacatgcagaaattagtggtttcaggattgttgccgctcaagtccgggtgacaagctttcatgcaatcgtagtaggccttctt |
171 |
Q |
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|||| |||||||||||||| |||||||||||||||| ||||||| ||||| ||||| |||||||| |||| |||||| |||| |||||| |||||||| |
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| T |
31172660 |
catagacttcattgatgaaggtgcagaaattagtggtctcaggatcattgccactcaaatccgggtggcaagttttcatacaattgtagtatgccttctt |
31172759 |
T |
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| Q |
172 |
gatctgctctggtgtagcatctggaa |
197 |
Q |
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| T |
31172760 |
gatctgctctggtgttgcatctggaa |
31172785 |
T |
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